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[175878_s_at]

Description Y73B3A.J /REP_DB=WormBase Gene ID /WP=CE26578 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 83      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 31.1
(-1.4)
A 		12.9
(-2.5)
A 		5.7
(-3)
A 		101.4
(3)
A 		96
B 39.2
(-0)
A 		5.7
(-3)
A 		47.4
(0.7)
A 		72.9
(3)
A 		67
C 17.1
(-2)
A 		19.5
(-1.9)
A 		3.7
(-3)
A 		87.4
(3)
A 		84
avr 29.1
(-1.7) 		12.7
(-3) 		18.9
(-2.5) 		87.2
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 6.9
(-2.4)
A 		3.8
(-2.9)
A 		42
(3)
A 		36.3
(2.1)
A 		35
(1.9)
A 		2.9
(-3)
A 		39
B 7.9
(-3)
A 		9.7
(-2.8)
A 		53.8
(3)
A 		10.5
(-2.7)
A 		37.6
(0.9)
A 		23.9
(-0.9)
A 		46
C 7.9
(-2.6)
A 		49.8
(0.7)
A 		3
(-3)
A 		63.1
(1.7)
A 		79.6
(3)
A 		54
(1)
A 		77
avr 7.6
(-3) 		21.1
(-1.1) 		32.9
(0.5) 		36.6
(1) 		50.7
(3) 		26.9
(-0.3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.3
(1.4)
A 		2.8
(-2.4)
A 		1.5
(-3)
A 		14.8
(3)
A 		13
B 12.5
(1.7)
A 		1.4
(-3)
A 		11
(1.1)
A 		15.5
(3)
A 		14
C 5.6
(-1.1)
A 		5.6
(-1.1)
A 		1.3
(-3)
A 		14.7
(3)
A 		13
avr 9.8
(0.3) 		3.3
(-3) 		4.6
(-2.3) 		15
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.3
(-2.6)
A 		1.4
(-2.6)
A 		9.2
(2.2)
A 		9.2
(2.2)
A 		10.6
(3)
A 		0.7
(-3)
A 		10
B 2.8
(-3)
A 		3.2
(-2.8)
A 		13.1
(1.9)
A 		2.8
(-3)
A 		15.3
(3)
A 		8.9
(-0.1)
A 		13
C 2.9
(-2.5)
A 		15.2
(0.5)
A 		0.8
(-3)
A 		12.7
(-0.1)
A 		25.8
(3)
A 		18.1
(1.2)
A 		25
avr 2.3
(-3) 		6.6
(-1.3) 		7.7
(-0.8) 		8.2
(-0.6) 		17.2
(3) 		9.2
(-0.2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175878_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19586
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.J NCBI
Target Description Y73B3A.J /REP_DB=WormBase Gene ID /WP=CE26578 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075667(11), NM_074473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075667 NCBI Caenorhabditis elegans Y73B3A.13 (Y73B3A.13) mRNA, complete cds. 11/11 None
NM_074473 NCBI Caenorhabditis elegans F28F8.7 (F28F8.7) mRNA, complete cds. 11/11 None
SNAP00000036078 ENSEMBL cdna:SNAP chromosome:CEL140:V:15580237:15583430:-1 11/11 None
GENEFINDER00000036084 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15580237:15583430:-1 10/11 None
SNAP00000022313 ENSEMBL cdna:SNAP chromosome:CEL140:X:131022:132689:1 11/11 None
GENEFINDER00000022351 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:131022:133864:1 11/11 None
F28F8.7 ENSEMBL cdna:known chromosome:CEL140:V:15581677:15583430:-1 gene:F28F8.7 11/11 None
Y73B3A.13 ENSEMBL cdna:known chromosome:CEL140:X:131022:132689:1 gene:Y73B3A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:131021-132689(+) 100.0 100.0
chrV:15581751-15583430(-) 97.93 97.93
Public Domain and Genome References
Gene Title

Ensembl F28F8.7
Y73B3A.13
Entrez Gene 185072 Entrez gene
190631 Entrez gene
SwissProt O18691 EMBL-EBI
Q95XF4 EMBL-EBI
WormBase CE09761 Wormbase
CE26578 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39353 Hypothetical protein Y73B3A.13 [Caenorhabditis elegans] ref|NP_508068.1| Y73B3A.13 [Caenorhabditis elegans] 0.0
blast CAB03010 Hypothetical protein F28F8.7 [Caenorhabditis elegans] ref|NP_506874.1| F28F8.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000949 EMBL-EBI ELM2 domain 4.2E-21
Pfam IPR000949 EMBL-EBI ELM2 domain 2.8E-4
Pfam IPR000949 EMBL-EBI ELM2 domain 1.8E-10
Sequence
Target Sequence 
>C. ELEGANS:175878_S_AT
attgtatgcccaactacaacctcgacgagatccatcacttctgccacgcattccaacatc
acatcatggaaaaaaccagcaaatcttgccactgcaacgagccgctctgtgaggacttgg
agtttcaacctcgatgggcttgtcagaattgcaacaaggcgttgaagtattacgatccaa
ttcccgacgatactaagctctgtctgatctgttctacttatcaaggaattactggaaaca
cccgtccatcgaaagccaccgtgttcagcaaggaagaagccaaaaaggttatttcttgga
atacgctgatgcgaacatcgtcgggctcactgtcacgggaagagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTATGCCCAACTACAACCTCGA 252 3 713 Antisense
ACAACCTCGACGAGATCCATCACTT 49 113 728 Antisense
CACGCATTCCAACATCACATCATGG 213 201 757 Antisense
CACTGCAACGAGCCGCTCTGTGAGG 710 197 802 Antisense
AGGACTTGGAGTTTCAACCTCGATG 647 53 824 Antisense
AACCTCGATGGGCTTGTCAGAATTG 689 145 839 Antisense
GAAGTATTACGATCCAATTCCCGAC 532 335 876 Antisense
AATTCCCGACGATACTAAGCTCTGT 398 177 891 Antisense
TTACTGGAAACACCCGTCCATCGAA 128 681 941 Antisense
CTGATGCGAACATCGTCGGGCTCAC 379 239 1018 Antisense
GGGCTCACTGTCACGGGAAGAGTTT 410 493 1035 Antisense
Sequence Source Affymetrix Proprietary Database