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[175877_at]

Description T13G4.B /REP_DB=WormBase Gene ID /WP=CE21181 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 07      4grp_total > 27      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 16.1
(2.4)
A 		17.1
(3)
A 		7.5
(-3)
A 		13
(0.4)
A 		10
B 17.8
(1.3)
A 		21
(3)
A 		12.7
(-1.4)
A 		9.8
(-3)
A 		11
C 9.6
(-2.6)
A 		33.6
(1.3)
A 		7.4
(-3)
A 		43.8
(3)
A 		36
avr 14.5
(-0.8) 		23.9
(3) 		9.2
(-3) 		22.2
(2.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 11
(-0.9)
A 		16.1
(3)
A 		8.4
(-2.8)
A 		9.1
(-2.3)
A 		12.8
(0.5)
A 		8.2
(-3)
A 		8
B 47.4
(3)
A 		9
(-2.6)
A 		19.3
(-1.1)
A 		9.1
(-2.6)
A 		6
(-3)
A 		6.6
(-2.9)
A 		41
C 10.5
(0.7)
A 		12.5
(2.4)
A 		10.5
(0.7)
A 		13.2
(3)
A 		6.3
(-3)
A 		7.4
(-2)
A 		7
avr 23
(3) 		12.5
(-1) 		12.7
(-1) 		10.5
(-1.8) 		8.4
(-2.6) 		7.4
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.8
(3)
A 		3.7
(-0.2)
A 		2
(-2.8)
A 		1.9
(-3)
A 		4
B 5.7
(3)
A 		5.2
(2.2)
A 		3
(-1.5)
A 		2.1
(-3)
A 		4
C 3.2
(-2.5)
A 		9.7
(3)
A 		2.6
(-3)
A 		7.4
(1.1)
A 		7
avr 4.9
(0.9) 		6.2
(3) 		2.5
(-3) 		3.8
(-0.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2
(-2.7)
A 		5.7
(3)
A 		1.8
(-3)
A 		2.3
(-2.2)
A 		3.9
(0.2)
A 		2
(-2.7)
A 		4
B 16.5
(3)
A 		3
(-2.7)
A 		4.7
(-2)
A 		2.4
(-3)
A 		2.4
(-3)
A 		2.5
(-3)
A 		14
C 3.9
(3)
A 		3.8
(2.7)
A 		2.7
(-0.8)
A 		2.6
(-1.1)
A 		2
(-3)
A 		2.5
(-1.4)
A 		2
avr 7.5
(3) 		4.2
(-0.8) 		3.1
(-2.1) 		2.4
(-2.9) 		2.8
(-2.4) 		2.3
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19617
Sequence Type Exemplar sequence
Representative Public ID T13G4.B NCBI
Target Description T13G4.B /REP_DB=WormBase Gene ID /WP=CE21181 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075825 NCBI Caenorhabditis elegans T13G4.6 (T13G4.6) mRNA, complete cds. 11/11 None
T13G4.6 ENSEMBL cdna:known chromosome:CEL140:X:1202376:1203226:-1 gene:T13G4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044622 8/11 Cross Hyb Matching Probes None
GENEFINDER00000044625 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1202375-1203226(-) 93.73 100.0
Public Domain and Genome References
Gene Title
Ensembl T13G4.6
Entrez Gene 188486 Entrez gene
SwissProt Q966F3 EMBL-EBI
WormBase CE21181 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84575 Hypothetical protein T13G4.6 [Caenorhabditis elegans] ref|NP_508226.1| T13G4.6 [Caenorhabditis elegans] 1.0E-146
Sequence
Target Sequence 
>C. ELEGANS:175877_AT
gccaggctttgcacaaaccgaggcaccggcggatcctgtcggaggaggatatgctccgga
gcaccttcctcctcaccaaggtgttccaggatggtttgttccaatgcaaggatggacagc
tccgattcgtccacccttccttcaattctgcccagctcctggcttcgcaccgacgccgtg
gtttcctgccccgtacggcggacctcatccagggtggtttgctccacaatacggatggta
tggcccaccgcgaggattcccctatccaccgccgccacctccaatgtaccatcatcccat
gttcatggcaaattataacccgccgcagcatggtgccgtcaacccaacgccatccaatgg
agaggctcagaacacggatcattagaagaaatccacaagatataaatctcgaagcaattc
tgaaattctcattatgtccccccatcttatttacaaccacaattttttcttctattttac
atcaatcttgtgaactttccaaaattctcatccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGGCTTTGCACAAACCGAGGCA 99 271 167 Antisense
TCCTCCTCACCAAGGTGTTCCAGGA 701 591 233 Antisense
CAAGGATGGACAGCTCCGATTCGTC 29 185 273 Antisense
CCTCATCCAGGGTGGTTTGCTCCAC 648 265 369 Antisense
CAATGTACCATCATCCCATGTTCAT 154 183 448 Antisense
TGGCAAATTATAACCCGCCGCAGCA 85 547 472 Antisense
TCAACCCAACGCCATCCAATGGAGA 564 629 505 Antisense
GGAGAGGCTCAGAACACGGATCATT 241 517 525 Antisense
TCTGAAATTCTCATTATGTCCCCCC 119 609 585 Antisense
CCCCCATCTTATTTACAACCACAAT 158 261 605 Antisense
GAACTTTCCAAAATTCTCATCCTTT 662 349 658 Antisense
Sequence Source Affymetrix Proprietary Database