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[175876_at]

Description C14B9.6 /REP_DB=WormBase Gene ID /WP=CE00077 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 16      4grp_total > 31      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 97.8
(2.9)
P 		51.1
(-1.3)
A 		31.5
(-3)
A 		99.2
(3)
P 		68
B 101.8
(3)
P 		67.1
(-2.5)
A 		63.9
(-3)
A 		95.2
(2)
P 		38
C 124
(3)
P 		63.9
(-3)
A 		65.7
(-2.8)
P 		80.7
(-1.3)
P 		60
avr 107.9
(3) 		60.7
(-2.2) 		53.7
(-3) 		91.7
(1.2) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 86.7
(-0.2)
A 		143.4
(3)
P 		42.7
(-2.6)
A 		76.1
(-0.7)
A 		35.4
(-3)
A 		115.3
(1.4)
P 		108
B 60.8
(3)
P 		37
(-0.5)
A 		52.2
(1.8)
P 		21.5
(-2.7)
A 		40
(-0)
A 		19.5
(-3)
A 		41
C 116.9
(3)
P 		42.9
(-0.9)
A 		106.6
(2.5)
P 		4.2
(-3)
A 		95.9
(1.9)
P 		39.1
(-1.1)
M 		113
avr 88.1
(3) 		74.4
(1.5) 		67.2
(0.7) 		33.9
(-3) 		57.1
(-0.4) 		58
(-0.3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 35.6
(3)
P 		11.1
(-2.4)
A 		8.2
(-3)
A 		14.5
(-1.6)
P 		27
B 32.5
(3)
P 		16.6
(-2.4)
A 		14.8
(-3)
A 		20.3
(-1.1)
P 		18
C 41
(3)
P 		18.4
(-1.9)
A 		22.9
(-1)
P 		13.6
(-3)
P 		27
avr 36.4
(3) 		15.4
(-3) 		15.3
(-3) 		16.1
(-2.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 16
(-2)
A 		51
(3)
P 		9.3
(-3)
A 		19.3
(-1.6)
A 		10.7
(-2.8)
A 		28.1
(-0.3)
P 		42
B 21.2
(3)
P 		12.3
(-0.4)
A 		12.7
(-0.3)
P 		5.7
(-3)
A 		16.3
(1.1)
A 		7.3
(-2.4)
A 		16
C 43.3
(3)
P 		13.1
(-1.3)
A 		27.1
(0.7)
P 		0.9
(-3)
A 		31
(1.3)
P 		13.1
(-1.3)
M 		42
avr 26.8
(3) 		25.5
(2.6) 		16.4
(-0.4) 		8.6
(-3) 		19.3
(0.5) 		16.2
(-0.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175876_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7756
Sequence Type Exemplar sequence
Representative Public ID C14B9.6 NCBI
Target Description C14B9.6 /REP_DB=WormBase Gene ID /WP=CE00077 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066372 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-8) (gei-8) mRNA, complete cds. 11/11 None
SNAP00000018768 ENSEMBL cdna:SNAP chromosome:CEL140:III:8111538:8118411:-1 11/11 None
GENEFINDER00000018780 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8111538:8125396:-1 11/11 None
C14B9.6a ENSEMBL cdna:known chromosome:CEL140:III:8115653:8125396:-1 gene:C14B9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171207 7/11 Cross Hyb Matching Probes A 
NM_066371 7/11 Cross Hyb Matching Probes A 
C14B9.6c 7/11 Cross Hyb Matching Probes A 
C14B9.6b 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176145 3 1 NM_066371 175896_at (11)
NM_066372 175876_at (11)
NM_171207 174852_at (11), 175896_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8115990-8125392(-) 98.82 100.0
Public Domain and Genome References
Ensembl C14B9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27950 Gex interacting protein protein 8, isoform a [Caenorhabditis elegans] ref|NP_498773.2| GEX Interacting protein family member (gei-8) [Caenorhabditis elegans] 0.0
blast AAM22026 Gex interacting protein protein 8, isoform c [Caenorhabditis elegans] ref|NP_741245.1| GEX Interacting protein family member (gei-8) [Caenorhabditis elegans] 0.0
blast AAA27949 Gex interacting protein protein 8, isoform b [Caenorhabditis elegans] ref|NP_498772.1| GEX Interacting protein family member (gei-8) [Caenorhabditis elegans] sp|P34333|GEI8_CAEEL Gex-3 interacting protein 0.0
blast S44759 C14B9.5 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 9.9E-10
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 0.021
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 9.9E-10
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 0.021
Sequence
Target Sequence 
>C. ELEGANS:175876_AT
ttcaccagctctaattgcacaacctattcctcaacagcttataccgcaacgagtctctac
gcctgctcagatactcacgccgactccagttcgaccgactgcggcgtcaactccttctat
ggatcaatttcttgggttattcaagcagcaacaacagcagcaacaacaacagccacaaca
atcgaatcttatgcaacaacttggaaatataaatcctcagtttcttgctcttcttcttca
acaacaacagcaacagcaacaagttcaacaggcacaggtacaggcagctcaaactcaagg
atctcttacatctggaactccatttcaagcacagcaaagaccagatgaagcacttcagaa
gttattttctagtccagagatgctcggaacactactcaacgcaaaatatcaatttcctca
gtttccacaagctattcaacaaaatccattgctcatgaacgctcaacatcagctaattct
tcagcagcagcaactagccatgcagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACCAGCTCTAATTGCACAACCT 563 687 2481 Antisense
TATTCCTCAACAGCTTATACCGCAA 199 665 2505 Antisense
CTTATACCGCAACGAGTCTCTACGC 613 221 2518 Antisense
GCGTCAACTCCTTCTATGGATCAAT 687 289 2584 Antisense
TATAAATCCTCAGTTTCTTGCTCTT 649 659 2688 Antisense
GGCAGCTCAAACTCAAGGATCTCTT 86 537 2763 Antisense
AGGATCTCTTACATCTGGAACTCCA 366 57 2778 Antisense
GAGATGCTCGGAACACTACTCAACG 23 397 2857 Antisense
TATCAATTTCCTCAGTTTCCACAAG 411 659 2887 Antisense
AATCCATTGCTCATGAACGCTCAAC 517 167 2923 Antisense
GCAGCAGCAACTAGCCATGCAGCAT 177 313 2964 Antisense
Sequence Source Affymetrix Proprietary Database