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[175874_at]

Description ZK105.D /REP_DB=WormBase Gene ID /WP=CE26337 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 55      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 34
(3)
A 		22.2
(0.6)
A 		4.4
(-3)
A 		29.3
(2)
A 		30
B 10.4
(-3)
A 		19.7
(0.3)
A 		27.2
(3)
A 		15.2
(-1.3)
A 		17
C 16.2
(0.2)
A 		5
(-3)
A 		23
(2.1)
A 		26.1
(3)
A 		21
avr 20.2
(0.5) 		15.6
(-3) 		18.2
(-1) 		23.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 1.3
(-3)
A 		25
(0.9)
A 		18.3
(-0.2)
A 		12.3
(-1.2)
A 		37.4
(3)
A 		29.3
(1.7)
A 		36
B 10.3
(-2)
A 		6.4
(-2.7)
A 		39.1
(3)
A 		7.9
(-2.4)
A 		4.7
(-3)
A 		37.7
(2.8)
A 		34
C 26.1
(0.5)
A 		32.7
(1.6)
A 		25.8
(0.4)
A 		6.9
(-2.6)
A 		4.6
(-3)
A 		41.6
(3)
A 		37
avr 12.6
(-2.2) 		21.4
(-0.3) 		27.7
(1.1) 		9
(-3) 		15.6
(-1.5) 		36.2
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.4
(3)
A 		4.8
(-1.1)
A 		1.2
(-3)
A 		4.3
(-1.3)
A 		11
B 3.3
(-2.8)
A 		4.9
(0.3)
A 		6.3
(3)
A 		3.2
(-3)
A 		3
C 5.4
(0.6)
A 		1.4
(-3)
A 		8
(3)
A 		4.4
(-0.3)
A 		7
avr 7
(3) 		3.7
(-3) 		5.2
(-0.3) 		4
(-2.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.2
(-3)
A 		8.9
(1.7)
A 		4
(-0.9)
A 		3.1
(-1.4)
A 		11.3
(3)
A 		7.1
(0.7)
A 		11
B 3.6
(-2.2)
A 		2.1
(-2.9)
A 		9.5
(0.8)
A 		2.1
(-2.9)
A 		1.9
(-3)
A 		14
(3)
A 		12
C 9.7
(1)
A 		10
(1.1)
A 		6.6
(-0.5)
A 		1.4
(-3)
A 		1.5
(-3)
A 		13.9
(3)
A 		13
avr 4.5
(-1.5) 		7
(0) 		6.7
(-0.2) 		2.2
(-3) 		4.9
(-1.3) 		11.7
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175874_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19394
Sequence Type Exemplar sequence
Representative Public ID ZK105.D NCBI
Target Description ZK105.D /REP_DB=WormBase Gene ID /WP=CE26337 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072592(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072592 NCBI Caenorhabditis elegans ZK105.3 (ZK105.3) mRNA, complete cds. 11/11 None
SNAP00000002769 ENSEMBL cdna:SNAP chromosome:CEL140:V:7699734:7703352:1 11/11 None
GENEFINDER00000002801 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7699734:7707114:1 11/11 None
ZK105.3 ENSEMBL cdna:known chromosome:CEL140:V:7699800:7703352:1 gene:ZK105.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7699800-7703353(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK105.3
Entrez Gene 191222 Entrez gene
SwissProt Q965Z8 EMBL-EBI
WormBase CE39079 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504993 ZK105.3 [Caenorhabditis elegans] 0.0
blast AAK68610 Hypothetical protein ZK105.3 [Caenorhabditis elegans] 0.0
blast AAC78189 Hypothetical protein F46F5.11 [Caenorhabditis elegans] ref|NP_493817.1| F46F5.11 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.2E-87
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 6.6E-120
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504993.2 1 7-24
SNAP00000002769 1 7-24
GENEFINDER00000002801 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:175874_AT
ttactcgagagttttccatttgaatggaatctacaacatttcaaacgtttggtggagcgg
agattatggaaaaaaagcagctatcaacattttgaaaactatcaaaatcactaacaatac
aaaatttcaagatgcatggaacaaatttgacaaaggattgcaaaattacgctttcttcaa
cttgacagataacgcagaaacacaaatgctgaatccgattggaaaaagtatctcagattt
ttactatattcccacattacaaagcgagtactatgccagtcttatgcggttattctatga
aaaccaattcttcttggaaatcgcagtgaataggtttttgcgatccgtggatcattcaac
atctctctatgctcgaaccagttatctttggacaaaccgtgagaaatgggatacagttta
tcacaagaatatggttgcaatgcatcctgtcaaaattagtaaattcatgaaacctggtgc
agctagaaagcgatattgcgcttcaatacttcaaatttggtcggatattattttcggtgg
atctcgtaattaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTCGAGAGTTTTCCATTTGAAT 448 681 1713 Antisense
AATTACGCTTTCTTCAACTTGACAG 44 177 1876 Antisense
GATTTTTACTATATTCCCACATTAC 379 429 1948 Antisense
ACAAAGCGAGTACTATGCCAGTCTT 175 107 1971 Antisense
ATGCCAGTCTTATGCGGTTATTCTA 48 41 1985 Antisense
ATAGGTTTTTGCGATCCGTGGATCA 212 19 2042 Antisense
GATCATTCAACATCTCTCTATGCTC 620 419 2062 Antisense
CTCTCTATGCTCGAACCAGTTATCT 396 231 2075 Antisense
GAAACCTGGTGCAGCTAGAAAGCGA 447 357 2181 Antisense
GCGATATTGCGCTTCAATACTTCAA 261 291 2202 Antisense
ATTTTCGGTGGATCTCGTAATTACA 408 1 2242 Antisense
Sequence Source Affymetrix Proprietary Database