[Home] | [Total List]

[175873_at]

Description Y34F4.F /REP_DB=WormBase Gene ID /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      4grp_high_8_8 > 04      6grp_total > 83      4grp_total > 12      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 176.6
(-2)
P 		186.3
(-1.6)
A 		155.2
(-3)
P 		285.9
(3)
P 		131
B 183.9
(-1.1)
P 		134.5
(-3)
P 		135.2
(-3)
P 		287.2
(3)
P 		153
C 182.8
(1.3)
P 		118.7
(-2.1)
P 		100.4
(-3)
A 		216.6
(3)
P 		116
avr 181.1
(-0.7) 		146.5
(-2.3) 		130.3
(-3) 		263.2
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 487
1 2 3 4 5 6 range
A 54.2
(-3)
A 		124
(-1.8)
P 		245
(0.2)
P 		415.6
(3)
P 		371.9
(2.3)
P 		197.3
(-0.6)
P 		361
B 116
(-3)
P 		156.1
(-2.3)
P 		226.2
(-1.1)
P 		355.9
(1.2)
P 		461.8
(3)
P 		280.6
(-0.1)
P 		346
C 111.9
(-3)
P 		148.7
(-2.5)
P 		179.2
(-2.1)
P 		357.1
(0.4)
P 		541.5
(3)
P 		291.1
(-0.5)
P 		430
avr 94
(-3) 		142.9
(-2.2) 		216.8
(-1) 		376.2
(1.6) 		458.4
(3) 		256.3
(-0.3) 		364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 64.3
(3)
P 		40.4
(-3)
A 		40.6
(-2.9)
P 		41.8
(-2.6)
P 		24
B 58.6
(2.5)
P 		33.2
(-2.6)
P 		31.3
(-3)
P 		61.2
(3)
P 		30
C 60.5
(3)
P 		34.1
(-3)
P 		35
(-2.8)
A 		36.5
(-2.5)
P 		26
avr 61.1
(3) 		35.9
(-2.9) 		35.6
(-3) 		46.5
(-0.4) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 10
(-3)
A 		44.1
(-1)
P 		53.4
(-0.5)
P 		105.4
(2.6)
P 		112.2
(3)
P 		48
(-0.8)
P 		102
B 40.4
(-3)
P 		52
(-2.5)
P 		54.9
(-2.4)
P 		94.3
(-0.8)
P 		187.6
(3)
P 		104.6
(-0.4)
P 		147
C 41.5
(-3)
P 		45.4
(-2.8)
P 		45.6
(-2.8)
P 		71.8
(-1.6)
P 		175.2
(3)
P 		97.4
(-0.5)
P 		134
avr 30.6
(-3) 		47.2
(-2.2) 		51.3
(-2) 		90.5
(-0.2) 		158.3
(3) 		83.3
(-0.5) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175873_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19043
Sequence Type Exemplar sequence
Representative Public ID Y34F4.F NCBI
Target Description Y34F4.F /REP_DB=WormBase Gene ID /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064914 NCBI Caenorhabditis elegans Y34F4.1 (Y34F4.1) mRNA, complete cds. 11/11 None
Y34F4.1 ENSEMBL cdna:known chromosome:CEL140:III:1020968:1021291:1 gene:Y34F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1020967-1021291(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y34F4.1
Entrez Gene 189591 Entrez gene
SwissProt Q9GR66 EMBL-EBI
WormBase CE26643 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG37944 Hypothetical protein Y34F4.1 [Caenorhabditis elegans] ref|NP_497315.1| Y34F4.1 [Caenorhabditis elegans] 1.0E-46
blast AAG37943 Hypothetical protein Y34F4.2 [Caenorhabditis elegans] ref|NP_497313.1| Y34F4.2 [Caenorhabditis elegans] 1.0E-15
blast AAK66024 Hypothetical protein Y34F4.5 [Caenorhabditis elegans] ref|NP_497317.2| Y34F4.5 [Caenorhabditis elegans] 9.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497315.1 2 13-35,62-84
Y34F4.1 2 13-35,62-84
Sequence
Target Sequence 
>C. ELEGANS:175873_AT
tgaagttctgcttctacggactttctcttcttactggttttttgctccatgttgttggag
ttttctcgccatgcttcttcacctactatttatatagcagatattatgatcagacggatc
tgctgagctatgggatcgatccggggataccttggggcaactggttcaaatttgcagtct
tcacaagctacttgtcagttgtctgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGTTCTGCTTCTACGGACTTTC 491 575 23 Antisense
TTCTCTTCTTACTGGTTTTTTGCTC 217 691 45 Antisense
CTGGTTTTTTGCTCCATGTTGTTGG 95 241 56 Antisense
TGTTGTTGGAGTTTTCTCGCCATGC 555 561 72 Antisense
ATGCTTCTTCACCTACTATTTATAT 408 43 93 Antisense
ATGATCAGACGGATCTGCTGAGCTA 227 47 128 Antisense
TCTGCTGAGCTATGGGATCGATCCG 387 609 141 Antisense
GATCGATCCGGGGATACCTTGGGGC 237 417 156 Antisense
GATACCTTGGGGCAACTGGTTCAAA 39 425 168 Antisense
AAATTTGCAGTCTTCACAAGCTACT 453 115 190 Antisense
CAAGCTACTTGTCAGTTGTCTGTCA 577 183 206 Antisense
Sequence Source Affymetrix Proprietary Database