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[175871_at]

Description Y34F4.D /REP_DB=WormBase Gene ID /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 43      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 91.8
(-0.4)
A 		97.9
(0.6)
A 		111.3
(3)
A 		77.3
(-3)
A 		34
B 89.7
(1.4)
A 		110.6
(3)
A 		71.7
(0.1)
A 		29.9
(-3)
A 		81
C 72.8
(-1.9)
A 		95
(0.5)
A 		62.2
(-3)
A 		117.7
(3)
A 		56
avr 84.8
(-0.8) 		101.2
(3) 		81.7
(-1.5) 		75
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 756
1 2 3 4 5 6 range
A 91.4
(-3)
A 		110.5
(-2.8)
P 		366
(0.2)
P 		607.3
(3)
P 		561.2
(2.5)
P 		98.2
(-2.9)
P 		516
B 74.7
(-3)
A 		125.9
(-2.3)
P 		386.7
(1.3)
P 		425.2
(1.9)
P 		506.2
(3)
P 		120.6
(-2.4)
A 		432
C 54.2
(-3)
A 		99.2
(-2.6)
P 		384.3
(-0.4)
P 		810.4
(3)
P 		265.8
(-1.3)
P 		87
(-2.7)
P 		756
avr 73.4
(-3) 		111.9
(-2.6) 		379
(0.4) 		614.3
(3) 		444.4
(1.1) 		101.9
(-2.7) 		541
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 33.4
(3)
A 		21.3
(-0.3)
A 		29.1
(1.8)
A 		11.3
(-3)
A 		22
B 28.6
(3)
A 		27.3
(2.6)
A 		16.6
(-0.2)
A 		6.4
(-3)
A 		22
C 24.1
(0.4)
A 		27.3
(3)
A 		21.7
(-1.5)
A 		19.9
(-3)
A 		7
avr 28.7
(3) 		25.3
(1.7) 		22.5
(0.7) 		12.5
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 16.9
(-3)
A 		39.3
(-2.1)
P 		79.7
(-0.5)
P 		154
(2.4)
P 		169.4
(3)
P 		23.9
(-2.7)
P 		153
B 26
(-3)
A 		41.9
(-2.5)
P 		93.9
(-0.7)
P 		112.6
(-0.1)
P 		205.7
(3)
P 		45
(-2.4)
A 		180
C 20.1
(-3)
A 		30.3
(-2.6)
P 		97.8
(0.3)
P 		163
(3)
P 		86
(-0.2)
P 		29.1
(-2.6)
P 		143
avr 21
(-3) 		37.2
(-2.3) 		90.5
(0.1) 		143.2
(2.5) 		153.7
(3) 		32.7
(-2.5) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19084
Sequence Type Exemplar sequence
Representative Public ID Y34F4.D NCBI
Target Description Y34F4.D /REP_DB=WormBase Gene ID /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000027783 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1008441:1009680:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1008440-1010026(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG37943 Hypothetical protein Y34F4.2 [Caenorhabditis elegans] ref|NP_497313.1| Y34F4.2 [Caenorhabditis elegans] 6.0E-44
blast AAG37944 Hypothetical protein Y34F4.1 [Caenorhabditis elegans] ref|NP_497315.1| Y34F4.1 [Caenorhabditis elegans] 8.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027783 4 7-29,60-82,102-124,134-153
Sequence
Target Sequence 
>C. ELEGANS:175871_AT
gagttgggctcacattctggagatcttggtggcgggacgcctctacggttgccgttttca
catgccttttgtcggccatttttcaaaatctagtgatcgtggcgtatttctttgttattc
atgagtcacacaccaaaaaccaggaatattcttattctcggaagctcatagttttgctga
aactcattaaatgggtgttgctagctaatactcttttcataattgttaactcaattctac
tcacactgtcggctacgtcttttagtgttagtttgagaaaggctcccatgcaggcgccga
aacaatgtctgattagagctcattttccgagttttagacacaaaaattcgagctctccac
ctagaaaaacctattacctgcctcggggagtcgaaacccagaccttttgctccataggca
aggcgcttgcgccactttgcttactgcgccactttgcactcatgctgctgcgctgctgcg
tggcggtcggcaagcaagctaccggtggcgcaggcgggggtcgaacccccgatctttttc
accatagtcaagccgctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTGGGCTCACATTCTGGAGATC 242 397 143 Antisense
TCTACGGTTGCCGTTTTCACATGCC 103 615 184 Antisense
CATGCCTTTTGTCGGCCATTTTTCA 223 211 203 Antisense
TGATCGTGGCGTATTTCTTTGTTAT 142 565 236 Antisense
GTGTTGCTAGCTAATACTCTTTTCA 397 485 337 Antisense
CTGTCGGCTACGTCTTTTAGTGTTA 303 239 388 Antisense
TATTACCTGCCTCGGGGAGTCGAAA 652 361 514 Antisense
GGAGTCGAAACCCAGACCTTTTGCT 496 515 529 Antisense
CAAGGCGCTTGCGCCACTTTGCTTA 29 183 561 Antisense
TCGGCAAGCAAGCTACCGGTGGCGC 386 599 629 Antisense
TTTTTCACCATAGTCAAGCCGCTTA 110 675 677 Antisense
Sequence Source Affymetrix Proprietary Database