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[175870_s_at]

Description Y34F4.A /REP_DB=WormBase Gene ID /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 0      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 24.6
(-3)
A 		28.5
(-2.6)
A 		81.7
(3)
A 		80.7
(2.9)
A 		57
B 33.8
(-1.3)
A 		28.6
(-1.8)
A 		15.4
(-3)
A 		82.2
(3)
A 		67
C 67
(0.5)
A 		23
(-3)
A 		63.5
(0.2)
A 		99.3
(3)
A 		76
avr 41.8
(-1.5) 		26.7
(-3) 		53.5
(-0.4) 		87.4
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 56.1
(-3)
A 		54
(-3)
A 		103.8
(-2)
A 		343.3
(3)
P 		225.2
(0.6)
P 		61.5
(-2.8)
A 		289
B 60.7
(-2.4)
A 		35.4
(-3)
A 		59.1
(-2.4)
A 		274.1
(3)
P 		206.9
(1.3)
P 		43.2
(-2.8)
A 		239
C 66.5
(-2.9)
A 		64.4
(-3)
A 		107.6
(-1.2)
A 		206.1
(2.9)
P 		207.9
(3)
P 		93.1
(-1.8)
A 		144
avr 61.1
(-2.7) 		51.3
(-3) 		90.2
(-2) 		274.5
(3) 		213.3
(1.4) 		65.9
(-2.6) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9
(-1.9)
A 		6.2
(-3)
A 		21.3
(3)
A 		11.8
(-0.8)
A 		15
B 10.8
(0.1)
A 		7.1
(-1.5)
A 		3.6
(-3)
A 		17.5
(3)
A 		14
C 22.2
(3)
A 		6.6
(-3)
A 		22.1
(3)
A 		16.7
(0.9)
A 		16
avr 14
(1.9) 		6.6
(-3) 		15.7
(3) 		15.3
(2.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 10.3
(-3)
A 		19.2
(-2.3)
A 		22.6
(-2)
A 		87.1
(3)
P 		68
(1.5)
P 		15
(-2.6)
A 		77
B 21.1
(-2.2)
A 		11.8
(-3)
A 		14.3
(-2.8)
A 		72.6
(2)
P 		84.1
(3)
P 		16.1
(-2.6)
A 		72
C 24.6
(-2.4)
A 		19.7
(-3)
A 		27.4
(-2)
A 		41.4
(-0.3)
P 		67.3
(3)
P 		31.2
(-1.6)
A 		48
avr 18.7
(-2.8) 		16.9
(-3) 		21.4
(-2.5) 		67
(2.3) 		73.1
(3) 		20.8
(-2.6) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175870_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18990
Sequence Type Exemplar sequence
Representative Public ID Y34F4.A NCBI
Target Description Y34F4.A /REP_DB=WormBase Gene ID /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064916
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y34F4.4 ENSEMBL cdna:known chromosome:CEL140:III:1023281:1024548:-1 gene:Y34F4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064915 3/11 Cross Hyb Matching Probes None
SNAP00000027777 1/11 Cross Hyb Matching Probes None
SNAP00000027779 1/11 Cross Hyb Matching Probes None
GENEFINDER00000027782 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1023269-1028319(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y34F4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK66023 Hypothetical protein Y34F4.4 [Caenorhabditis elegans] ref|NP_497316.2| Y34F4.4 [Caenorhabditis elegans] 2.0E-37
Sequence
Target Sequence 
>C. ELEGANS:175870_S_AT
gatctacctaactattttttgctactgcatcatgatctgtgcttactggtggattttcca
gggaatcctcgtgaaaaaatgcgggtatactcgacaaatactcatcgtgctgttctatat
cgtttggacgatggttttcattttaatactctctatgttaagcatgtttacatgggccgc
gacagcgaaccttaattctgagaacaacgaatgggcattttttgttctctttcctgcttt
tcttttcagctttttagccgtcatacttgctgatgatcttttacaaacaggcgtgaggaa
tattgccaaaaaattccctaacgaatctcttccaccaagactaaagggaatgtatcgcga
gtcaaacgttgagaaacgcctaacaagacttgaaaaacggtgcgagtcgaaatttgagca
acgtcttttacatctggagcaactcaattcaaaccttgagcagcgtctgtcagacctaga
acaagatctattcgactcccagcaacttgtttcagactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTACCTAACTATTTTTTGCTAC 662 419 741 Antisense
CATCATGATCTGTGCTTACTGGTGG 398 213 768 Antisense
AATACTCATCGTGCTGTTCTATATC 62 173 837 Antisense
GGCCGCGACAGCGAACCTTAATTCT 186 543 915 Antisense
TCCTGCTTTTCTTTTCAGCTTTTTA 316 593 972 Antisense
AGCTTTTTAGCCGTCATACTTGCTG 315 77 988 Antisense
TAACGAATCTCTTCCACCAAGACTA 176 639 1059 Antisense
GAGCAACGTCTTTTACATCTGGAGC 87 391 1156 Antisense
AAACCTTGAGCAGCGTCTGTCAGAC 296 125 1191 Antisense
GAACAAGATCTATTCGACTCCCAGC 220 353 1219 Antisense
ACTCCCAGCAACTTGTTTCAGACTT 225 99 1235 Antisense
Sequence Source Affymetrix Proprietary Database