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[175869_at]

Description Y69A2AR.X /REP_DB=WormBase Gene ID /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 2.6
(-2.9)
A 		1.6
(-3)
A 		1.9
(-3)
A 		51.3
(3)
A 		50
B 5.4
(3)
A 		3.8
(0.5)
A 		3.1
(-0.6)
A 		1.6
(-3)
A 		4
C 1.3
(-3)
A 		2.6
(-2.6)
A 		1.7
(-2.9)
A 		20.2
(3)
A 		19
avr 3.1
(-2.8) 		2.7
(-2.9) 		2.2
(-3) 		24.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 50.6
(3)
A 		1.9
(-3)
A 		2.9
(-2.9)
A 		4.8
(-2.6)
A 		5.6
(-2.5)
A 		19.5
(-0.8)
A 		49
B 1.4
(-3)
A 		2.5
(3)
A 		1.9
(-0.3)
A 		2.3
(1.9)
A 		1.9
(-0.3)
A 		2.4
(2.5)
A 		1
C 1.4
(-3)
A 		8.1
(-0.9)
A 		20.7
(3)
A 		2.4
(-2.7)
A 		3.1
(-2.5)
A 		2.7
(-2.6)
A 		19
avr 17.8
(3) 		4.2
(-2.6) 		8.5
(-0.8) 		3.2
(-3) 		3.5
(-2.9) 		8.2
(-0.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1
(-2.4)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		7.5
(3)
A 		7
B 1.7
(3)
A 		0.9
(-0.4)
A 		0.7
(-1.3)
A 		0.3
(-3)
A 		1
C 0.4
(-3)
A 		0.8
(-2.2)
A 		0.6
(-2.6)
A 		3.4
(3)
A 		3
avr 1
(-2.2) 		0.7
(-2.8) 		0.6
(-3) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.3
(3)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		1.2
(-2.6)
A 		1.7
(-2.2)
A 		4.7
(-0.2)
A 		9
B 0.5
(-3)
A 		0.8
(1.5)
A 		0.5
(-3)
A 		0.6
(-1.5)
A 		0.8
(1.5)
A 		0.9
(3)
A 		0
C 0.5
(-3)
A 		2.5
(-0.5)
A 		5.3
(3)
A 		0.5
(-3)
A 		1
(-2.4)
A 		0.9
(-2.5)
A 		5
avr 3.4
(3) 		1.3
(-1.8) 		2.1
(0) 		0.8
(-3) 		1.2
(-2.1) 		2.2
(0.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19160
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.X NCBI
Target Description Y69A2AR.X /REP_DB=WormBase Gene ID /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067826 NCBI Caenorhabditis elegans Y69A2AR.10 (Y69A2AR.10) mRNA, complete cds. 11/11 None
Y69A2AR.10 ENSEMBL cdna:known chromosome:CEL140:IV:2589040:2594517:1 gene:Y69A2AR.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018816 7/11 Cross Hyb Matching Probes None
GENEFINDER00000018837 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4895935-4898277(+) 49.03 49.03
chrIV:2584779-2594523(+) 100.0 100.0
chrV:20039954-20042340(+) 50.14 50.14
chrV:8383110-8385476(+) 49.86 49.86
chrI:2130536-2132925(-) 50.19 50.19
Public Domain and Genome References
Ensembl Y69A2AR.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500227 Y69A2AR.10 [Caenorhabditis elegans] 0.0
blast NP_494890 R05F9.4 [Caenorhabditis elegans] gb|AAA83167.1| Hypothetical protein R05F9.4 [Caenorhabditis elegans] 0.0
blast NP_490937 Y37E3.18 [Caenorhabditis elegans] gb|AAK27868.1| Hypothetical protein Y37E3.18 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.4E-55
Sequence
Target Sequence 
>C. ELEGANS:175869_AT
gtccaggtaaacccttattctgcaaattcaagaattttgatgcagcagaatgcaagtgtt
cagaaccacgcgctaaagtctgtaaagaagattttgagtttgatgctcagagagagtact
gtacgaaatcggtcaaacatccaaaagacttgagatgcgaaggcgaactcttattcttca
aattccactggaacacaacggcttgtcactgtataaaccaccagcgtgacagagtttgtg
cacatgacttccagtcggatgaagataagaaatatcaatgcaataaaaagcctacagact
tgagatgcaaaaaacagaaactctactgcaaatttcatttggatgacaaggattgtcggt
gttttgagtcgaatcagaaggcttgtaaaaaaggtgtgtcgggattttattcaagcaacg
atactttgaaatttccctcttctatttggcggcaattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCAGGTAAACCCTTATTCTGCAA 201 475 3689 Antisense
GCAAGTGTTCAGAACCACGCGCTAA 216 321 3740 Antisense
GAACCACGCGCTAAAGTCTGTAAAG 346 345 3751 Antisense
GGCGAACTCTTATTCTTCAAATTCC 560 541 3850 Antisense
TTCCACTGGAACACAACGGCTTGTC 519 697 3871 Antisense
ACGGCTTGTCACTGTATAAACCACC 223 95 3886 Antisense
ACCACCAGCGTGACAGAGTTTGTGC 323 85 3905 Antisense
GAGTTTGTGCACATGACTTCCAGTC 431 399 3920 Antisense
GGTGTGTCGGGATTTTATTCAAGCA 575 499 4081 Antisense
GATACTTTGAAATTTCCCTCTTCTA 108 423 4108 Antisense
CCCTCTTCTATTTGGCGGCAATTTA 690 257 4123 Antisense
Sequence Source Affymetrix Proprietary Database