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[175868_at]

Description Y69A2AR.G /REP_DB=WormBase Gene ID /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 09      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 15.5
(-2.1)
A 		9.5
(-3)
A 		16.5
(-2)
A 		50.5
(3)
A 		41
B 3.8
(-2.7)
A 		3
(-3)
A 		19.5
(3)
A 		16.7
(2)
A 		17
C 5.6
(-3)
A 		33.8
(-0.6)
A 		22.3
(-1.6)
A 		75
(3)
A 		69
avr 8.3
(-3) 		15.4
(-1.9) 		19.4
(-1.3) 		47.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 41.2
(3)
M 		33.9
(1.8)
A 		21.4
(-0.2)
A 		28.7
(1)
A 		33.7
(1.8)
A 		4.2
(-3)
A 		37
B 27.1
(1.8)
A 		20.8
(-0.4)
A 		17.3
(-1.6)
A 		16.6
(-1.8)
A 		13.2
(-3)
A 		30.7
(3)
A 		18
C 16.4
(-1.5)
A 		41.7
(3)
A 		35.4
(1.9)
P 		29.5
(0.8)
A 		13.4
(-2.1)
A 		8.1
(-3)
A 		34
avr 28.2
(1.7) 		32.1
(3) 		24.7
(0.5) 		24.9
(0.6) 		20.1
(-1) 		14.3
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.6
(1)
A 		2.1
(-3)
A 		4.3
(-0.5)
A 		7.4
(3)
A 		5
B 1.2
(-2.2)
A 		0.7
(-3)
A 		4.5
(3)
A 		3.6
(1.6)
A 		4
C 1.9
(-3)
A 		9.7
(1.4)
A 		7.8
(0.3)
A 		12.6
(3)
A 		11
avr 2.9
(-3) 		4.2
(-1.4) 		5.5
(0.1) 		7.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.6
(0.6)
M 		12
(3)
A 		4.7
(-1)
A 		7.3
(0.4)
A 		10.2
(2)
A 		1
(-3)
A 		11
B 9.4
(1.3)
A 		6.9
(-0.8)
A 		4.2
(-3)
A 		4.4
(-2.8)
A 		5.4
(-2)
A 		11.5
(3)
A 		7
C 6.1
(-1)
A 		12.7
(3)
A 		9
(0.8)
P 		5.9
(-1.1)
A 		4.3
(-2)
A 		2.7
(-3)
A 		10
avr 7.7
(-0.1) 		10.5
(3) 		6
(-2) 		5.9
(-2.1) 		6.6
(-1.3) 		5.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175868_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19330
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.G NCBI
Target Description Y69A2AR.G /REP_DB=WormBase Gene ID /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067824 NCBI Caenorhabditis elegans Y69A2AR.26 (Y69A2AR.26) mRNA, complete cds. 11/11 None
GENEFINDER00000018853 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2578552:2581439:-1 9/11 None
Y69A2AR.26 ENSEMBL cdna:known chromosome:CEL140:IV:2577116:2581580:-1 gene:Y69A2AR.26 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018813 2/11 Cross Hyb Matching Probes None
SNAP00000018815 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2577121-2581586(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-242
Ensembl Y69A2AR.26
Entrez Gene 190547 Entrez gene
SwissProt Q95XH8 EMBL-EBI
WormBase CE36367 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68571 Hypothetical protein Y69A2AR.26 [Caenorhabditis elegans] ref|NP_500225.2| Y69A2AR.26 [Caenorhabditis elegans] 0.0
blast AAK68571 Hypothetical protein Y69A2AR.26 [Caenorhabditis elegans] ref|NP_500225.2| Y69A2AR.26 [Caenorhabditis elegans] 1.0E-129
blast CAB03504 Hypothetical protein ZK1037.5 [Caenorhabditis elegans] ref|NP_506798.1| ZK1037.5 [Caenorhabditis elegans] 6.0E-52
blast CAB03504 Hypothetical protein ZK1037.5 [Caenorhabditis elegans] ref|NP_506798.1| ZK1037.5 [Caenorhabditis elegans] 5.0E-51
blast AAC25898 Hypothetical protein F38H12.3 [Caenorhabditis elegans] ref|NP_504139.1| F38H12.3 [Caenorhabditis elegans] 7.0E-50
blast AAC25898 Hypothetical protein F38H12.3 [Caenorhabditis elegans] ref|NP_504139.1| F38H12.3 [Caenorhabditis elegans] 2.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.2E-19
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.5E-27
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 9.1E-26
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 8.7E-16
Sequence
Target Sequence 
>C. ELEGANS:175868_AT
gggcaaatcaactcgagtctttttcaatgttaagccatgtagacaagcagaatattttat
cagaatatggtattgcattcacacttattgatcaaggttacaagacggcacgcgatgctg
atgaacaatgctggttacttcagaatggcagtgtgctgcattgtgagcaacttttcaaca
gttctgatgctgacttggtcaaccagttgattgcaaatatcagtcagccattgaaacgtc
tagaactagatgaatatgaatgtggcctgctgaaatcattgcttctgctgtcttcctcgt
ttcctggcgaagtgcaactaaactcacagcaatctcgagcaaaatgtttaacagaaatgc
tacaacacagaaatgatccagaacgacaatcgataagtttgttcaagaaggtcgcaagag
atgatgatacaggtagagaaatgagatttctcaagtgtcctttgggagacccaagagtgg
cgaaaatcaggatgtatttctacaagaaattcggtgagcaatcgaggagctcatacgatc
ggaggtcggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCAAATCAACTCGAGTCTTTTTC 544 491 467 Antisense
GGTATTGCATTCACACTTATTGATC 664 505 535 Antisense
GATCAAGGTTACAAGACGGCACGCG 88 423 556 Antisense
GACGGCACGCGATGCTGATGAACAA 655 375 570 Antisense
AACAGTTCTGATGCTGACTTGGTCA 364 137 643 Antisense
GTCAGCCATTGAAACGTCTAGAACT 294 465 689 Antisense
TGAAATCATTGCTTCTGCTGTCTTC 220 573 737 Antisense
TTCCTCGTTTCCTGGCGAAGTGCAA 53 697 759 Antisense
GCAACTAAACTCACAGCAATCTCGA 658 319 780 Antisense
CTCAAGTGTCCTTTGGGAGACCCAA 410 225 916 Antisense
GAGCTCATACGATCGGAGGTCGGTC 324 387 993 Antisense
Sequence Source Affymetrix Proprietary Database