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[175867_at]

Description Y105E8B.C /REP_DB=WormBase Gene ID /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 27      4grp_high_8_8 > 17      6grp_total > 27      4grp_total > 38      6grp_cgc > 13      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 170.9
(3)
P 		72.1
(-2.5)
P 		62.6
(-3)
P 		81.2
(-2)
P 		108
B 171.9
(3)
P 		72.9
(-1.9)
P 		50.5
(-3)
P 		111
(-0)
P 		121
C 160.8
(3)
P 		97.2
(-0)
P 		33.7
(-3)
A 		135
(1.8)
P 		127
avr 167.9
(3) 		80.7
(-1.4) 		48.9
(-3) 		109.1
(0) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 118.2
(3)
P 		67.5
(-0.2)
P 		23.8
(-3)
A 		55.4
(-1)
A 		64.7
(-0.4)
P 		74.3
(0.2)
P 		94
B 100.6
(3)
P 		86.8
(1.1)
P 		69.4
(-1.3)
P 		67.1
(-1.6)
P 		57.2
(-3)
P 		62.5
(-2.3)
P 		43
C 107.7
(3)
P 		103.5
(2.3)
P 		70.6
(-3)
P 		78.1
(-1.8)
M 		74.1
(-2.4)
P 		79.9
(-1.5)
P 		37
avr 108.8
(3) 		85.9
(0.5) 		54.6
(-3) 		66.9
(-1.6) 		65.3
(-1.8) 		72.2
(-1.1) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 62.2
(3)
P 		15.7
(-2.5)
P 		16.4
(-2.5)
P 		11.9
(-3)
P 		50
B 54.8
(3)
P 		18
(-2.1)
P 		11.7
(-3)
P 		23.6
(-1.3)
P 		43
C 53.2
(3)
P 		27.9
(-0.7)
P 		11.7
(-3)
A 		22.8
(-1.4)
P 		42
avr 56.7
(3) 		20.5
(-2) 		13.3
(-3) 		19.4
(-2.2) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 21.8
(2.3)
P 		24
(3)
P 		5.2
(-3)
A 		14
(-0.2)
A 		19.5
(1.6)
P 		18.1
(1.1)
P 		19
B 35
(3)
P 		28.9
(1)
P 		16.8
(-3)
P 		17.8
(-2.7)
P 		23.2
(-0.9)
P 		23.3
(-0.9)
P 		18
C 39.9
(3)
P 		31.6
(0.9)
P 		18
(-2.4)
P 		15.7
(-3)
M 		24
(-0.9)
P 		26.8
(-0.2)
P 		24
avr 32.2
(3) 		28.2
(1.7) 		13.3
(-3) 		15.8
(-2.2) 		22.2
(-0.2) 		22.7
(-0) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175867_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18776
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.C NCBI
Target Description Y105E8B.C /REP_DB=WormBase Gene ID /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170937 NCBI Caenorhabditis elegans BBS (Bardet-Biedl Syndrome) protein family member (bbs-1) (bbs-1) mRNA, complete cds. 11/11 None
SNAP00000013321 ENSEMBL cdna:SNAP chromosome:CEL140:I:14355855:14384135:-1 11/11 None
GENEFINDER00000013492 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14379440:14384135:-1 11/11 None
Y105E8A.5 ENSEMBL cdna:known chromosome:CEL140:I:14379440:14384135:-1 gene:Y105E8A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14379370-14384066(-) 87.46 99.16
Public Domain and Genome References
Gene Title
Gene Symbol bbs-1
Ensembl Y105E8A.5
Entrez Gene 260219 Entrez gene
SwissProt Q9NEZ7 EMBL-EBI
WormBase CE25181 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.19517.1.S1_AT similar to Bardet-Biedl syndrome 1 cfa
DROSOPHILA_2:1624339_AT dm
DROSGENOME1:148306_AT dm
HG-U133_PLUS_2:218471_S_AT Bardet-Biedl syndrome 1 hs
HG-U133A:218471_S_AT Bardet-Biedl syndrome 1 hs
HG-U133A_2:218471_S_AT Bardet-Biedl syndrome 1 hs
HU35KSUBC:RC_N93061_AT Bardet-Biedl syndrome 1 hs
U133_X3P:G13375892_3P_A_AT Bardet-Biedl syndrome 1 hs
U133_X3P:HS.54890.0.A1_3P_X_AT Bardet-Biedl syndrome 1 hs
U133_X3P:HS.54890.0.A1_3P_A_AT Bardet-Biedl syndrome 1 hs
HG-U133_PLUS_2:222643_S_AT Bardet-Biedl syndrome 1 hs
HG-U133B:222643_S_AT Bardet-Biedl syndrome 1 hs
HG-U95B:53099_AT Bardet-Biedl syndrome 1 hs
HG-U95C:65526_AT Bardet-Biedl syndrome 1 hs
HG-U133_PLUS_2:229142_S_AT Bardet-Biedl syndrome 1 hs
HG-U133B:229142_S_AT Bardet-Biedl syndrome 1 hs
HG-U95B:58919_AT Bardet-Biedl syndrome 1 hs
HU35KSUBA:H30056_AT Bardet-Biedl syndrome 1 hs
HU35KSUBD:RC_AA393807_AT Bardet-Biedl syndrome 1 hs
U133_X3P:HS.54890.1.A1_3P_AT Bardet-Biedl syndrome 1 hs
MG-U74BV2:111663_AT Bardet-Biedl syndrome 1 homolog (human) mm
MG-U74BV2:163201_AT Bardet-Biedl syndrome 1 homolog (human) mm
MOE430B:1437310_AT Bardet-Biedl syndrome 1 homolog (human) mm
MOUSE430_2:1437310_AT Bardet-Biedl syndrome 1 homolog (human) mm
Protein Similarities
Method ID Description E-Value
blast CAC48119 Hypothetical protein Y105E8A.5 [Caenorhabditis elegans] ref|NP_740933.1| BBS (Bardet-Biedl Syndrome) protein family member (bbs-1) [Caenorhabditis elegans] 0.0
blast CAE64128 Hypothetical protein CBG08744 [Caenorhabditis briggsae] 0.0
blast CAB60843 Hypothetical protein Y105E8A.2 [Caenorhabditis elegans] ref|NP_740930.2| Y105E8A.2 [Caenorhabditis elegans] 0.0
blast CAE64125 Hypothetical protein CBG08741 [Caenorhabditis briggsae] 0.0
blast XP_783764 PREDICTED: similar to Bardet-Biedl syndrome 1 [Strongylocentrotus purpuratus] 2.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR001753 EMBL-EBI Enoyl-CoA hydratase/isomerase 4.7E-79
Sequence
Target Sequence 
>C. ELEGANS:175867_AT
ttaaagacggctccatcgctattcagatattccggagaaaagcgaatttcgatacaaaat
tggattataaccaggtcccgcaggcccatgctctgaagcttcagattccgaaaaagacta
aagttttcattgatcttactcagcgggaggttcagctagggaatagaatccataaggtgt
accaaaaaaacctgttcgatgtgaagtaccggcttgccgccagttacctagaattgacat
ccagcgcatcggccaccgtatccacgactactgtacttccagtcgagatttctgtggata
ttcatggatttgggcctacgttcaggatgaccatacatctattgtcctctagcaagcaaa
acctgtacgacatgcatctttcgataatctctgacccggaactctacgattttgacactc
cactaatcccagttcacttactggcttccggacaatcatactctttcacaacattgctct
actgcaaggatccggagaaggccgccaactgcgatgtccgagccctcctagtccatgcaa
aacgggccacaccaattgtgactgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAAGACGGCTCCATCGCTATTCA 80 685 1426 Antisense
CTTGCCGCCAGTTACCTAGAATTGA 14 217 1638 Antisense
TAGAATTGACATCCAGCGCATCGGC 465 651 1654 Antisense
GGGCCTACGTTCAGGATGACCATAC 685 491 1737 Antisense
GACCATACATCTATTGTCCTCTAGC 335 383 1754 Antisense
GAACTCTACGATTTTGACACTCCAC 220 349 1824 Antisense
ATCCCAGTTCACTTACTGGCTTCCG 145 37 1851 Antisense
TCCGGACAATCATACTCTTTCACAA 428 593 1872 Antisense
TCTTTCACAACATTGCTCTACTGCA 588 615 1887 Antisense
CCTCCTAGTCCATGCAAAACGGGCC 21 267 1949 Antisense
ACGGGCCACACCAATTGTGACTGCG 139 95 1967 Antisense
Sequence Source Affymetrix Proprietary Database