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[175866_s_at]

Description Y69A2AR.BB /REP_DB=WormBase Gene ID /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 21.9
(-0.9)
A 		38.7
(3)
A 		12.7
(-3)
A 		36
(2.4)
A 		26
B 17.6
(-3)
A 		30
(1.4)
A 		28.9
(1)
A 		34.4
(3)
A 		17
C 17.1
(-3)
A 		58.1
(-0.1)
A 		20.7
(-2.7)
A 		100.8
(3)
A 		84
avr 18.9
(-3) 		42.3
(0.7) 		20.8
(-2.7) 		57.1
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 10.1
(-3)
A 		10.9
(-3)
A 		37.4
(-2)
A 		21.2
(-2.6)
A 		155.9
(2.2)
A 		177.6
(3)
A 		168
B 22.8
(-2.5)
A 		22
(-2.5)
A 		11.1
(-3)
A 		95.2
(0.6)
A 		122.7
(1.7)
A 		152.6
(3)
M 		142
C 38.8
(-2.1)
A 		20.3
(-3)
A 		25.5
(-2.8)
A 		95.1
(0.6)
A 		145.6
(3)
A 		136.7
(2.6)
A 		125
avr 23.9
(-2.7) 		17.7
(-3) 		24.7
(-2.7) 		70.5
(-0.7) 		141.4
(2.4) 		155.6
(3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8
(2.5)
A 		8.4
(3)
A 		3.3
(-3)
A 		5.3
(-0.6)
A 		5
B 5.6
(-3)
A 		7.4
(3)
A 		6.7
(0.7)
A 		7.3
(2.7)
A 		2
C 5.7
(-3)
A 		16.7
(2.8)
A 		7.2
(-2.2)
A 		17
(3)
A 		11
avr 6.4
(-2.2) 		10.8
(3) 		5.7
(-3) 		9.9
(1.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 1.9
(-3)
A 		3.9
(-2.7)
A 		8.2
(-2.2)
A 		5.4
(-2.5)
A 		47
(3)
A 		43.2
(2.5)
A 		45
B 7.9
(-2.4)
A 		7.3
(-2.5)
A 		2.7
(-3)
A 		25.2
(-0.5)
A 		49.9
(2.2)
A 		56.9
(3)
M 		54
C 14.4
(-1.8)
A 		6.2
(-3)
A 		6.5
(-3)
A 		19.1
(-1.1)
A 		47.1
(3)
A 		45.8
(2.8)
A 		41
avr 8.1
(-2.7) 		5.8
(-3) 		5.8
(-3) 		16.6
(-1.5) 		48
(2.9) 		48.6
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175866_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19139
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.BB NCBI
Target Description Y69A2AR.BB /REP_DB=WormBase Gene ID /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171289(11), NM_171290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171289 NCBI Caenorhabditis elegans Y69A2AR.32a (Y69A2AR.32) mRNA, complete cds. 11/11 None
NM_171290 NCBI Caenorhabditis elegans Y69A2AR.32b (Y69A2AR.32) mRNA, complete cds. 11/11 None
SNAP00000018819 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2608058:2612310:1 11/11 None
GENEFINDER00000018844 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2608058:2612310:1 11/11 None
Y69A2AR.32a ENSEMBL cdna:known chromosome:CEL140:IV:2610419:2612372:1 gene:Y69A2AR.32 11/11 None
Y69A2AR.32b ENSEMBL cdna:known chromosome:CEL140:IV:2611219:2612310:1 gene:Y69A2AR.32 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2602599-2612316(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y69A2AR.32
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15620 Hypothetical protein Y69A2AR.32a [Caenorhabditis elegans] ref|NP_741340.2| Y69A2AR.32a [Caenorhabditis elegans] 0.0
blast AAM15622 Hypothetical protein Y69A2AR.6 [Caenorhabditis elegans] ref|NP_500232.2| Y69A2AR.6 [Caenorhabditis elegans] 1.0E-108
blast AAM15621 Hypothetical protein Y69A2AR.32b [Caenorhabditis elegans] ref|NP_741341.2| Y69A2AR.32b [Caenorhabditis elegans] 1.0E-101
blast AAM15620 Hypothetical protein Y69A2AR.32a [Caenorhabditis elegans] ref|NP_741340.2| Y69A2AR.32a [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 1.6E-5
Pfam IPR004087 EMBL-EBI KH 1.6E-5
Pfam IPR001388 EMBL-EBI Synaptobrevin 1.9E-10
Pfam IPR004087 EMBL-EBI KH 1.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018844 1 238-260
Sequence
Target Sequence 
>C. ELEGANS:175866_S_AT
atgagcatgttggccaattccgccgtccacgttattcagcggatccgacgtcaaattcca
cagacttgcagcttcgcccattggatgctcacggagcatatggagatgttggatcagtct
acggaatcgcccagcaaaagcgcatttggcagaagccacgtggaccggatgccacgtcag
aagagttcgctcactctgtatcctcgcgcgagtttgtcaccgatattgtgcacaagacga
agaatagtccgcgacgagcaaacgacgcgattttcagtctaaccgatgagattgtcaatg
actcgttgaaagccgcccaaacactgctcgcctcccatgaattgctcancttcgggcttc
aggatcagcaaaaaatgatgaaagttacgcagtatggagccggtgacaccagcagtcgga
aaaatcttccgtatccgccaccactgatgtccactccgatgccgcctccaggatattcaa
tgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCATGTTGGCCAATTCCGCCG 199 45 2276 Antisense
TCCGCCGTCCACGTTATTCAGCGGA 551 595 2294 Antisense
CAGCGGATCCGACGTCAAATTCCAC 367 203 2312 Antisense
CAAATTCCACAGACTTGCAGCTTCG 350 193 2327 Antisense
ACCGGATGCCACGTCAGAAGAGTTC 5 89 2439 Antisense
AGAAGAGTTCGCTCACTCTGTATCC 589 73 2454 Antisense
TGTATCCTCGCGCGAGTTTGTCACC 123 561 2472 Antisense
GAATAGTCCGCGACGAGCAAACGAC 186 327 2517 Antisense
ACGACGCGATTTTCAGTCTAACCGA 74 91 2537 Antisense
GCAGTATGGAGCCGGTGACACCAGC 492 311 2664 Antisense
ATGCCGCCTCCAGGATATTCAATGT 2 43 2734 Antisense
Sequence Source Affymetrix Proprietary Database