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[175864_at]

Description Y69A2AR.CC /REP_DB=WormBase Gene ID /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 03      6grp_cgc > 98      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 23.5
(-1.8)
A 		11.5
(-2.6)
A 		4.8
(-3)
A 		96.4
(3)
P 		92
B 13.7
(-0.9)
A 		5.2
(-3)
A 		7
(-2.6)
A 		29.9
(3)
A 		25
C 6.2
(-2.8)
A 		8.9
(-2.7)
A 		2.6
(-3)
A 		111.1
(3)
P 		109
avr 14.5
(-2.2) 		8.5
(-2.7) 		4.8
(-3) 		79.1
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 9.7
(3)
A 		4.8
(-2)
A 		7.4
(0.7)
A 		8.3
(1.6)
A 		3.8
(-3)
A 		3.8
(-3)
A 		6
B 3.8
(-2.9)
A 		8
(-2.2)
A 		3
(-3)
A 		8.8
(-2)
A 		38.3
(3)
A 		3.3
(-2.9)
A 		35
C 4
(-2.7)
A 		14.5
(3)
A 		5.1
(-2.1)
A 		3.4
(-3)
A 		7.4
(-0.8)
A 		6.6
(-1.3)
A 		11
avr 5.8
(-2.4) 		9.1
(-0.7) 		5.2
(-2.7) 		6.8
(-1.9) 		16.5
(3) 		4.6
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.5
(0.4)
A 		2.5
(-2.4)
A 		1.3
(-3)
A 		14.1
(3)
P 		13
B 4.4
(0.6)
A 		1.3
(-3)
A 		1.6
(-2.6)
A 		6.4
(3)
A 		5
C 2.1
(-2.6)
A 		2.6
(-2.4)
A 		0.9
(-3)
A 		18.7
(3)
P 		18
avr 5
(-1.1) 		2.1
(-2.6) 		1.3
(-3) 		13.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.8
(1.5)
A 		1.7
(1)
A 		1.6
(0.5)
A 		2.1
(3)
A 		1.1
(-2)
A 		0.9
(-3)
A 		1
B 1.3
(-2.8)
A 		2.7
(-2.2)
A 		0.7
(-3)
A 		2.3
(-2.4)
A 		15.6
(3)
A 		1.2
(-2.8)
A 		15
C 1.5
(-1.7)
A 		4.4
(3)
A 		1.3
(-2)
A 		0.7
(-3)
A 		2.4
(-0.2)
A 		2.2
(-0.6)
A 		4
avr 1.5
(-2.7) 		2.9
(-1) 		1.2
(-3) 		1.7
(-2.4) 		6.4
(3) 		1.4
(-2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175864_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19295
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.CC NCBI
Target Description Y69A2AR.CC /REP_DB=WormBase Gene ID /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067834
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018841 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2614199:2619766:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067834 1/11 Cross Hyb Matching Probes A 
NM_067833 2/11 Cross Hyb Matching Probes None
SNAP00000018821 2/11 Cross Hyb Matching Probes None
Y69A2AR.5 2/11 Cross Hyb Matching Probes None
Y69A2AR.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2614204-2620154(+) 87.87 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27265 Hypothetical protein Y69A2AR.5 [Caenorhabditis elegans] ref|NP_500234.3| Y69A2AR.5 [Caenorhabditis elegans] 1.0E-151
blast CAE68214 Hypothetical protein CBG13882 [Caenorhabditis briggsae] 1.0E-110
blast CAA64622 D-aspartate oxidase [Bos taurus] ref|NP_776333.1| D-aspartate oxidase [Bos taurus] sp|P31228|OXDD_BOVIN D-aspartate oxidase (DASOX) (DDO) 4.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR006076 EMBL-EBI FAD dependent oxidoreductase 1.1E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018841 1 402-424
Sequence
Target Sequence 
>C. ELEGANS:175864_AT
gatccggaattacacttcattggggatgtgctttggaatgtgctgaaattgtggaaaatg
tgctgaaaatgaaaaagtcgaagttaaaaaagttgggtctcgccacgaaatcctacagta
acctgcgagttttcgtggcgagatcctacatttttcatattgtatcaaagcggagccaat
tggtcacaaagtctttgatactctgcgtctcttcacttctacatactatttcgtcaggaa
atcgatgcctagagttcatcgacaaagtcgttggaattccgaaaaaattaattttgaaaa
tcagattttttttcaaaattttttttgccgataagaccatgaattttctgattttcattt
gttattatgtttcatttgtcatatgcttctntatcacctttattatcaataatattctca
caatggagggtgaaatgaaatgtccgatagaagaaattagggaaaagcctgagatgcgaa
aagctcagcaaacctatgaagttcaggtcgaagttgaagatactccagatcttgccgaga
ccttcaaattaagtataatcatgacctactttgctcataaaccgaaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCGGAATTACACTTCATTGGGG 533 279 893 Antisense
GGGGATGTGCTTTGGAATGTGCTGA 25 499 914 Antisense
TCTCGCCACGAAATCCTACAGTAAC 238 611 990 Antisense
GTAACCTGCGAGTTTTCGTGGCGAG 341 461 1010 Antisense
TCGTGGCGAGATCCTACATTTTTCA 484 605 1025 Antisense
GGAGCCAATTGGTCACAAAGTCTTT 353 521 1064 Antisense
AAAGTCTTTGATACTCTGCGTCTCT 162 123 1080 Antisense
GTCTCTTCACTTCTACATACTATTT 621 469 1099 Antisense
TGCCTAGAGTTCATCGACAAAGTCG 114 577 1138 Antisense
CAGATCTTGCCGAGACCTTCAAATT 7 207 1418 Antisense
GACCTACTTTGCTCATAAACCGAAA 220 383 1455 Antisense
Sequence Source Affymetrix Proprietary Database