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[175861_s_at]

Description C36E6.TEMP1B /REP_DB=WormBase Gene ID /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 33      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_highest_nonorm > 41      6grp_total > 11      4grp_total > 28      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 407
1 2 3 4 range
A 935.1
(-0.8)
P 		1192.4
(3)
P 		785.9
(-3)
P 		1170
(2.7)
P 		407
B 1031.8
(1.3)
P 		1004.5
(0.2)
P 		919.2
(-3)
P 		1076.9
(3)
P 		158
C 983.6
(3)
P 		929.4
(0.7)
P 		844.2
(-3)
P 		972.5
(2.5)
P 		139
avr 983.5
(0.6) 		1042.1
(2.2) 		849.8
(-3) 		1073.1
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 773.1
(-1.6)
P 		1039.1
(3)
P 		727.9
(-2.3)
P 		689.3
(-3)
P 		730.6
(-2.3)
P 		726.3
(-2.4)
P 		350
B 796.1
(0.4)
P 		862.9
(1.5)
P 		952.2
(3)
P 		710.2
(-1)
P 		590.5
(-3)
P 		632.8
(-2.3)
P 		362
C 775.5
(0.9)
P 		889.7
(3)
P 		842.1
(2.1)
P 		557.7
(-3)
P 		674.8
(-0.9)
P 		602.3
(-2.2)
P 		332
avr 781.6
(-0.2) 		930.6
(3) 		840.7
(1.1) 		652.4
(-3) 		665.3
(-2.7) 		653.8
(-3) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 340.5
(3)
P 		258.8
(0.1)
P 		205.4
(-1.8)
P 		171.3
(-3)
P 		169
B 329
(3)
P 		248.1
(-1.2)
P 		213
(-3)
P 		229.5
(-2.1)
P 		116
C 325.6
(3)
P 		267.2
(0.8)
P 		294.2
(1.8)
P 		164
(-3)
P 		162
avr 331.7
(3) 		258
(-0.1) 		237.5
(-0.9) 		188.3
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 142.5
(-3)
P 		369.6
(3)
P 		158.5
(-2.6)
P 		174.8
(-2.1)
P 		220.5
(-0.9)
P 		176.8
(-2.1)
P 		227
B 277
(2.4)
P 		287.2
(3)
P 		231.2
(-0.4)
P 		188.1
(-3)
P 		239.9
(0.1)
P 		236
(-0.1)
P 		99
C 287.4
(3)
P 		271.5
(2.5)
P 		214.3
(0.5)
P 		112.2
(-3)
P 		218.3
(0.6)
P 		201.6
(0.1)
P 		175
avr 235.6
(0.1) 		309.4
(3) 		201.3
(-1.3) 		158.4
(-3) 		226.2
(-0.3) 		204.8
(-1.2) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175861_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19562
Sequence Type Exemplar sequence
Representative Public ID C36E6.TEMP1B NCBI
Target Description C36E6.TEMP1B /REP_DB=WormBase Gene ID /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078424 NCBI Caenorhabditis elegans C36E6.1b (C36E6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000036956 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17429081:17437649:1 11/11 None
SNAP00000036938 ENSEMBL cdna:SNAP chromosome:CEL140:X:17435379:17437649:1 11/11 None
C36E6.1b ENSEMBL cdna:known chromosome:CEL140:X:17434382:17437992:1 gene:C36E6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181773 2 1 NM_078424 175861_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17434471-17437648(+) 100.0 100.0
Public Domain and Genome References
Ensembl C36E6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK09071 Hypothetical protein C36E6.1b [Caenorhabditis elegans] ref|NP_510825.1| C36E6.1b [Caenorhabditis elegans] 0.0
blast AAC69013 Hypothetical protein F11C7.1 [Caenorhabditis elegans] ref|NP_510824.1| F11C7.1 [Caenorhabditis elegans] 1.0E-153
blast AAB42272 Hypothetical protein M01A10.1 [Caenorhabditis elegans] ref|NP_491627.1| M01A10.1 [Caenorhabditis elegans] 1.0E-148
blast AAB42272 Hypothetical protein M01A10.1 [Caenorhabditis elegans] ref|NP_491627.1| M01A10.1 [Caenorhabditis elegans] 1.0E-140
blast AAB42272 Hypothetical protein M01A10.1 [Caenorhabditis elegans] ref|NP_491627.1| M01A10.1 [Caenorhabditis elegans] 1.0E-136
blast CAE69679 Hypothetical protein CBG15931 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 3.8E-11
Pfam IPR004087 EMBL-EBI KH 2.2E-11
Pfam IPR004087 EMBL-EBI KH 9.3E-11
Pfam IPR004087 EMBL-EBI KH 6.7E-17
Pfam IPR006029 EMBL-EBI Neurotransmitter-gated ion-channel transmembrane region 1.4E-9
Pfam IPR004087 EMBL-EBI KH 3.8E-11
Pfam IPR004087 EMBL-EBI KH 2.2E-11
Pfam IPR004087 EMBL-EBI KH 9.3E-11
Pfam IPR004087 EMBL-EBI KH 6.7E-17
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 1.5E-59
Pfam IPR004087 EMBL-EBI KH 3.8E-11
Pfam IPR004087 EMBL-EBI KH 2.2E-11
Pfam IPR004087 EMBL-EBI KH 9.3E-11
Pfam IPR004087 EMBL-EBI KH 6.7E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000036956 4 231-253,266-283,296-318,377-399
Sequence
Target Sequence 
>C. ELEGANS:175861_S_AT
aaatgtgggcaggccagccacttgttcagcaaccgcagcaaccccatcatattcatcaac
aaccagctcaacttcacccagtccaactaccgcaagtgatggctccaccaggttacccaa
ctcaagctgcctatccaccgcaggctgtttatcaacaaactagtgttgccgcgtggcatc
caatgcaacaagcccagccacagcagcaacaatatgttcaagcagcaattccagtgtcgc
aggcgatgtaccagccaccgcagcagcctgcaccagcacccgtggagactggactgtcgc
tctatgctcaatatgctatgcaggctgccgctcaacaacaagaacaacagcgagctcaga
tggctgctcagcaagaagcgaaacttgctaaacagcaaacaactcaacaagttgcccaga
aagacactgcttcagctcagaactctactggaggttcggctaaagacggagatgctgact
attccgcccaatggcttgagtattacatacacattggcgatcaagcgtcggctgatgcag
ttcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTGGGCAGGCCAGCCACTTGT 274 115 1316 Antisense
CAACTACCGCAAGTGATGGCTCCAC 262 189 1399 Antisense
TATCCACCGCAGGCTGTTTATCAAC 127 659 1447 Antisense
AAACTAGTGTTGCCGCGTGGCATCC 457 125 1472 Antisense
GGCATCCAATGCAACAAGCCCAGCC 339 537 1490 Antisense
AAGCAGCAATTCCAGTGTCGCAGGC 146 151 1535 Antisense
GTCGCTCTATGCTCAATATGCTATG 401 475 1611 Antisense
ATATGCTATGCAGGCTGCCGCTCAA 189 21 1626 Antisense
AGACACTGCTTCAGCTCAGAACTCT 16 73 1737 Antisense
ACGGAGATGCTGACTATTCCGCCCA 596 95 1781 Antisense
CAAGCGTCGGCTGATGCAGTTCGGG 629 185 1837 Antisense
Sequence Source Affymetrix Proprietary Database