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[175859_at]

Description C36E6.D /REP_DB=WormBase Gene ID /WP=CE20544 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 80      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12.4
(2.8)
A 		3.7
(-3)
A 		3.7
(-3)
A 		12.7
(3)
A 		9
B 2.3
(-3)
A 		11.8
(-0.2)
A 		22.4
(3)
A 		8.3
(-1.2)
A 		20
C 17
(3)
A 		2.7
(-3)
A 		11.4
(0.7)
A 		5.3
(-1.9)
A 		14
avr 10.6
(1.2) 		6.1
(-3) 		12.5
(3) 		8.8
(-0.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.2
(3)
A 		2
(-2.8)
A 		2.3
(-2.4)
A 		5.6
(1.2)
A 		4.4
(-0.1)
A 		1.8
(-3)
A 		5
B 1.2
(-3)
A 		19.9
(3)
A 		5.5
(-1.6)
A 		3.5
(-2.3)
A 		1.9
(-2.8)
A 		6.1
(-1.4)
A 		19
C 3.2
(-2.6)
A 		8.8
(-1.2)
A 		4.3
(-2.3)
A 		26.1
(3)
A 		1.6
(-3)
A 		12.7
(-0.3)
A 		25
avr 3.9
(-2.1) 		10.2
(2) 		4
(-2.1) 		11.7
(3) 		2.6
(-3) 		6.9
(-0.2) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.5
(3)
A 		0.8
(-3)
A 		1
(-2.7)
A 		1.9
(-1.2)
A 		4
B 0.7
(-3)
A 		2.9
(-0.1)
A 		5.2
(3)
A 		1.8
(-1.5)
A 		5
C 5.6
(3)
A 		0.8
(-3)
A 		4
(1)
A 		0.9
(-2.9)
A 		5
avr 3.6
(3) 		1.5
(-3) 		3.4
(2.4) 		1.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.3
(2.4)
A 		0.7
(-1.2)
A 		0.5
(-2.4)
A 		1.4
(3)
A 		1.3
(2.4)
A 		0.4
(-3)
A 		1
B 0.4
(-3)
A 		6.6
(3)
A 		1.3
(-2.1)
A 		0.9
(-2.5)
A 		0.8
(-2.6)
A 		2.3
(-1.2)
A 		6
C 1.2
(-2.1)
A 		2.7
(-0.2)
A 		1.1
(-2.2)
A 		5.2
(3)
A 		0.5
(-3)
A 		4.2
(1.7)
A 		5
avr 1
(-2.8) 		3.3
(3) 		1
(-2.8) 		2.5
(1) 		0.9
(-3) 		2.3
(0.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19563
Sequence Type Exemplar sequence
Representative Public ID C36E6.D NCBI
Target Description C36E6.D /REP_DB=WormBase Gene ID /WP=CE20544 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000036940 ENSEMBL cdna:SNAP chromosome:CEL140:X:17441518:17448306:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036961 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17441516-17442626(-) 100.0 100.0
chrX:17442952-17447559(-) 84.68 84.68
chrX:17444702-17447694(-) 85.23 85.23
chrX:17442373-17447505(-) 83.96 83.96
chrX:17442508-17445579(-) 84.86 84.86
chrX:17442817-17445939(-) 84.05 84.05
chrX:17444567-17445759(-) 83.78 83.78
chrX:17443761-17445225(-) 83.6 83.6
chrX:17443266-17444284(-) 83.51 83.51
chrX:17444477-17446524(-) 83.51 83.51
chrX:17444972-17446254(-) 83.42 83.42
chrX:17441988-17443025(-) 82.43 82.43
chrX:17443177-17445624(-) 83.78 83.78
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000036940 1 2072-2094
Sequence
Target Sequence 
>C. ELEGANS:175859_AT
ctctctatggtactcgaagctgtgctggtggatggagtcgaagtgttttctgtcgtactc
gaagcagtgctggtggatggagtcgaagtgctttctgtcgtactcgaagcagtgctggtg
gatggagtcgaagtgctctctgtggtactcgaagctgtgctggtggatggagtcgaagtg
ctctctgtcgtactcgaagctgtgctggtggatggagtcgaagtgctctctgtcgtactc
gaagcagtgctggtggatggagtcgaagtgctctctgtcgtactggatgccgtacttgat
gattgtgaagtgcttggtactgtggatgttaccgttgttgtggttacagttgttgttgtc
ggtatttggtattcaactgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCTATGGTACTCGAAGCTGTGC 449 229 703 Antisense
TCTATGGTACTCGAAGCTGTGCTGG 254 609 706 Antisense
TCTCTGTCGTACTGGATGCCGTACT 641 611 974 Antisense
GTCGTACTGGATGCCGTACTTGATG 710 461 979 Antisense
GGATGCCGTACTTGATGATTGTGAA 373 513 987 Antisense
GATTGTGAAGTGCTTGGTACTGTGG 309 435 1003 Antisense
GGTACTGTGGATGTTACCGTTGTTG 677 487 1018 Antisense
GATGTTACCGTTGTTGTGGTTACAG 69 395 1027 Antisense
GTGGTTACAGTTGTTGTTGTCGGTA 331 485 1042 Antisense
AGTTGTTGTTGTCGGTATTTGGTAT 379 65 1050 Antisense
GTCGGTATTTGGTATTCAACTGTAA 457 471 1060 Antisense
Sequence Source Affymetrix Proprietary Database