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[175858_at]

Description T13G4.H /REP_DB=WormBase Gene ID /WP=CE21187 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 50      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 9
(-2.5)
A 		3.9
(-3)
A 		10.6
(-2.3)
A 		61.1
(3)
A 		57
B 8.8
(-2.1)
A 		35.4
(3)
A 		4.6
(-2.9)
A 		4.1
(-3)
A 		31
C 7
(-2.9)
A 		11.6
(-2.1)
A 		6.2
(-3)
A 		40.8
(3)
A 		35
avr 8.3
(-2.7) 		17
(-0.9) 		7.1
(-3) 		35.3
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 58.9
(3)
A 		6.5
(-3)
A 		22.1
(-1.2)
A 		29.3
(-0.4)
A 		9.3
(-2.6)
A 		6.2
(-3)
A 		53
B 7.8
(-2.4)
A 		5.2
(-2.7)
A 		20.6
(-0.6)
A 		46.7
(3)
A 		7.6
(-2.4)
A 		3.2
(-3)
A 		44
C 6.6
(-2.5)
A 		28
(3)
A 		9.6
(-1.8)
A 		10.8
(-1.4)
A 		8.8
(-2)
A 		4.8
(-3)
A 		23
avr 24.4
(1.9) 		13.2
(-0.9) 		17.4
(0.1) 		28.9
(3) 		8.6
(-2) 		4.7
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.3
(-1.2)
A 		0.9
(-3)
A 		2.8
(-1.6)
A 		8.9
(3)
A 		8
B 2.8
(-1.5)
A 		8.7
(3)
A 		1.1
(-2.8)
A 		0.9
(-3)
A 		8
C 2.3
(-2.8)
A 		3.3
(-1.5)
A 		2.1
(-3)
A 		6.9
(3)
A 		5
avr 2.8
(-1.7) 		4.3
(0.8) 		2
(-3) 		5.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 10.9
(3)
A 		2.3
(-2.5)
A 		4.8
(-0.9)
A 		7.4
(0.8)
A 		2.8
(-2.2)
A 		1.5
(-3)
A 		9
B 2.7
(-2.2)
A 		1.7
(-2.7)
A 		5
(-1)
A 		12.4
(3)
A 		3.1
(-2)
A 		1.2
(-3)
A 		11
C 2.4
(-2.3)
A 		8.5
(3)
A 		2.4
(-2.3)
A 		2.2
(-2.5)
A 		2.9
(-1.9)
A 		1.6
(-3)
A 		7
avr 5.3
(1) 		4.2
(-0.2) 		4.1
(-0.3) 		7.3
(3) 		2.9
(-1.5) 		1.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175858_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19614
Sequence Type Exemplar sequence
Representative Public ID T13G4.H NCBI
Target Description T13G4.H /REP_DB=WormBase Gene ID /WP=CE21187 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T13G4.H
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T13G4.H T13G4.H /REP_DB=WormBase Gene ID /WP=CE21187 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009205 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1196857-1197727(+) 83.45 100.0
Sequence
Target Sequence 
>C. ELEGANS:175858_AT
tttgcgaggtttggagctggcggccatctcgtaaacaaagaaaagcacctgcatataagg
aatctgaagaacaacacactgggtcacggaatacatcttttgggtagcgttacgaatacg
atttgtttggtgaactgttcaaaccgctgtgcggcaacaggcaagcgagttgccggttgc
caaaaagttgccgaagtttcggcaaccaaaagccggttgccgaaattttttggaatcggc
aaattcggcaattgccggttgccaaaaatcccggttgccgtacagctctgtgtcgtacct
cacatcccgtatcccaaaaaattattaaattttaaacatttagacgggaattctttttgg
atttttagggttagaaatatttttcgtaacccgaaaaatgagagtgatattgaaatatta
gtcaacgttttaattatcgaacagtttggggtacagctactacaacagttttgtttctat
ttttgttacaatccctacccctcttctacaaagacccacccttatatggaacgatttttc
cgtcgtcaacactcattgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCGAGGTTTGGAGCTGGCGGCC 417 669 268 Antisense
TGGCGGCCATCTCGTAAACAAAGAA 23 541 285 Antisense
GAAGAACAACACACTGGGTCACGGA 2 339 333 Antisense
GGGTCACGGAATACATCTTTTGGGT 567 495 348 Antisense
GGTGAACTGTTCAAACCGCTGTGCG 222 501 396 Antisense
ACCGCTGTGCGGCAACAGGCAAGCG 707 87 410 Antisense
AACAGGCAAGCGAGTTGCCGGTTGC 413 119 423 Antisense
TCACATCCCGTATCCCAAAAAATTA 613 623 567 Antisense
GTTTGGGGTACAGCTACTACAACAG 709 449 711 Antisense
TTCTACAAAGACCCACCCTTATATG 707 689 771 Antisense
TTTTCCGTCGTCAACACTCATTGAA 630 677 803 Antisense
Sequence Source Affymetrix Proprietary Database