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[175857_at]

Description T13G4.C /REP_DB=WormBase Gene ID /WP=CE25996 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 92      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 7
(3)
A 		6.2
(1.7)
A 		3.2
(-3)
A 		7
(3)
A 		4
B 3.1
(-1.9)
A 		2.8
(-2.4)
A 		5.7
(3)
A 		2.5
(-3)
A 		3
C 1.9
(-3)
A 		6.6
(3)
A 		5.4
(1.5)
A 		4
(-0.3)
A 		5
avr 4
(-3) 		5.2
(3) 		4.8
(1) 		4.5
(-0.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.8
(-2.5)
A 		4.6
(-1.7)
A 		2.4
(-2.7)
A 		1.8
(-3)
A 		15.1
(3)
A 		2.2
(-2.8)
A 		13
B 4.7
(1)
A 		4.5
(0.7)
A 		6.2
(3)
A 		2.9
(-1.5)
A 		6
(2.7)
A 		1.8
(-3)
A 		4
C 4.6
(-0.8)
A 		3.6
(-1.5)
A 		9.6
(3)
A 		5.2
(-0.3)
A 		1.6
(-3)
A 		2.9
(-2)
A 		8
avr 4
(-1.1) 		4.2
(-0.8) 		6.1
(1.3) 		3.3
(-1.9) 		7.6
(3) 		2.3
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.5
(3)
A 		1.3
(-1.2)
A 		0.8
(-3)
A 		1
(-2.3)
A 		2
B 1
(0.8)
A 		0.7
(-1.5)
A 		1.3
(3)
A 		0.5
(-3)
A 		1
C 0.6
(-3)
A 		1.9
(3)
A 		1.9
(3)
A 		0.7
(-2.5)
A 		1
avr 1.4
(3) 		1.3
(2.1) 		1.3
(2.1) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.6
(-1.4)
A 		0.5
(-3)
A 		0.5
(-3)
A 		4.5
(3)
A 		0.5
(-3)
A 		4
B 1.7
(0.5)
A 		1.5
(-0.2)
A 		1.5
(-0.2)
A 		0.8
(-2.6)
A 		2.4
(3)
A 		0.7
(-3)
A 		2
C 1.7
(0.8)
A 		1.1
(-1.1)
A 		2.4
(3)
A 		1
(-1.4)
A 		0.5
(-3)
A 		1
(-1.4)
A 		2
avr 1.3
(-1) 		1.4
(-0.7) 		1.5
(-0.3) 		0.8
(-2.7) 		2.5
(3) 		0.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175857_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19609
Sequence Type Exemplar sequence
Representative Public ID T13G4.C NCBI
Target Description T13G4.C /REP_DB=WormBase Gene ID /WP=CE25996 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075824 NCBI Caenorhabditis elegans T13G4.5 (T13G4.5) mRNA, complete cds. 11/11 None
GENEFINDER00000044627 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1195104:1198477:-1 10/11 None
T13G4.5 ENSEMBL cdna:known chromosome:CEL140:X:1195104:1198477:-1 gene:T13G4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044621 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1195103-1198477(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13G4.5
Entrez Gene 188485 Entrez gene
SwissProt Q966F4 EMBL-EBI
WormBase CE25996 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84574 Hypothetical protein T13G4.5 [Caenorhabditis elegans] ref|NP_508225.1| T13G4.5 [Caenorhabditis elegans] 1.0E-152
blast AAK84574 Hypothetical protein T13G4.5 [Caenorhabditis elegans] ref|NP_508225.1| T13G4.5 [Caenorhabditis elegans] 1.0E-133
Sequence
Target Sequence 
>C. ELEGANS:175857_AT
gaggctccgagaaatcggtcggcggattgggtggctgctctgaatcccagaatggatccg
cctggagcgatatttttggtgatggtcttcaaatggactctgataccgaaagagctggca
gaattggacaaaatgaaaatgattcaatgagtgttgacgacggaaaaatcgttccatata
aggaaagcgatatctctcatgggattctggaaaagatggaaccgtccaatgagtctctgg
attccggacatggtatagattttttcaaaactttcaaacatccagcggaattgtcctttt
ccatgatccaagcagaagttcttccgatgacatttgacagttttgaagaacatattgatg
ccatttttacactttcttcaccacttcaactggttgaagagagcggtaagtttacaaaat
tcagcagaaaccagggtgatggaatcggaagcgtcgattgtgccaagggaattgacgttg
agcgaaatgatgggaaaatggcaactgtactcaagacacgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCTCCGAGAAATCGGTCGGCGG 710 405 221 Antisense
TGGCTGCTCTGAATCCCAGAATGGA 77 545 252 Antisense
GAATGGATCCGCCTGGAGCGATATT 225 333 270 Antisense
GCGATATCTCTCATGGGATTCTGGA 698 289 407 Antisense
ATGGAACCGTCCAATGAGTCTCTGG 119 53 436 Antisense
AACATCCAGCGGAATTGTCCTTTTC 127 137 497 Antisense
TGTCCTTTTCCATGATCCAAGCAGA 632 557 512 Antisense
GATGCCATTTTTACACTTTCTTCAC 223 415 577 Antisense
ACTTTCTTCACCACTTCAACTGGTT 242 103 591 Antisense
GAAGCGTCGATTGTGCCAAGGGAAT 641 343 668 Antisense
ATGGCAACTGTACTCAAGACACGCA 208 53 718 Antisense
Sequence Source Affymetrix Proprietary Database