[Home] | [Total List]

[175855_at]

Description T13G4.G /REP_DB=WormBase Gene ID /WP=CE21186 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 52      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8.1
(-1.3)
A 		4.8
(-3)
A 		10.3
(-0.2)
A 		16.5
(3)
A 		12
B 5.3
(-1.3)
A 		12
(3)
A 		8
(0.4)
A 		2.6
(-3)
A 		9
C 2.6
(-3)
A 		19
(3)
A 		3.8
(-2.6)
A 		11
(0.1)
A 		16
avr 5.3
(-3) 		11.9
(3) 		7.4
(-1.1) 		10
(1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 3.8
(-1.9)
A 		2.7
(-2.8)
A 		9.6
(3)
A 		4.3
(-1.5)
A 		3.1
(-2.5)
A 		2.5
(-3)
A 		7
B 3.1
(-0.5)
A 		1.4
(-3)
A 		3.5
(0.1)
A 		4.8
(2)
A 		2.6
(-1.2)
A 		5.5
(3)
A 		4
C 4.3
(-2.6)
A 		5
(-2.5)
A 		43
(3)
A 		22.3
(0)
A 		5.3
(-2.4)
A 		1.2
(-3)
A 		42
avr 3.7
(-2.7) 		3
(-3) 		18.7
(3) 		10.5
(-0.1) 		3.7
(-2.7) 		3.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3
(3)
A 		1
(-3)
A 		2.7
(2.1)
A 		2.4
(1.2)
A 		2
B 1.7
(-0.3)
A 		3
(3)
A 		1.9
(0.3)
A 		0.6
(-3)
A 		2
C 0.9
(-3)
A 		5.5
(3)
A 		1.3
(-2.5)
A 		1.9
(-1.7)
A 		5
avr 1.9
(-1.9) 		3.2
(3) 		2
(-1.5) 		1.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.7
(-2.6)
A 		1
(-1.4)
A 		2.1
(3)
A 		1.1
(-1)
A 		0.9
(-1.8)
A 		0.6
(-3)
A 		2
B 1.1
(-0.6)
A 		0.5
(-3)
A 		0.8
(-1.8)
A 		1.3
(0.2)
A 		1
(-1)
A 		2
(3)
A 		2
C 1.6
(-2.3)
A 		1.5
(-2.4)
A 		10.9
(3)
A 		4.5
(-0.7)
A 		1.7
(-2.3)
A 		0.4
(-3)
A 		11
avr 1.1
(-2.8) 		1
(-3) 		4.6
(3) 		2.3
(-0.8) 		1.2
(-2.7) 		1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19604
Sequence Type Exemplar sequence
Representative Public ID T13G4.G NCBI
Target Description T13G4.G /REP_DB=WormBase Gene ID /WP=CE21186 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075823 NCBI Caenorhabditis elegans T13G4.1 (T13G4.1) mRNA, complete cds. 11/11 None
SNAP00000044620 ENSEMBL cdna:SNAP chromosome:CEL140:X:1193144:1194211:1 10/11 None
GENEFINDER00000044626 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1193144:1193854:1 11/11 None
T13G4.1 ENSEMBL cdna:known chromosome:CEL140:X:1193144:1193854:1 gene:T13G4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1193143-1193854(+) 92.48 100.0
Public Domain and Genome References
Gene Title
Ensembl T13G4.1
Entrez Gene 188482 Entrez gene
SwissProt Q966F5 EMBL-EBI
WormBase CE21186 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84570 Hypothetical protein T13G4.1 [Caenorhabditis elegans] ref|NP_508224.1| T13G4.1 [Caenorhabditis elegans] 3.0E-94
blast AAK84570 Hypothetical protein T13G4.1 [Caenorhabditis elegans] ref|NP_508224.1| T13G4.1 [Caenorhabditis elegans] 1.0E-85
blast CAA80174 Hypothetical protein K11H3.4 [Caenorhabditis elegans] ref|NP_499184.1| K11H3.4 [Caenorhabditis elegans] sp|P34520|YM44_CAEEL Hypothetical protein K11H3.4 in chromosome III 2.0E-29
blast CAA80174 Hypothetical protein K11H3.4 [Caenorhabditis elegans] ref|NP_499184.1| K11H3.4 [Caenorhabditis elegans] sp|P34520|YM44_CAEEL Hypothetical protein K11H3.4 in chromosome III 3.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR003169 EMBL-EBI GYF 4.5E-10
Sequence
Target Sequence 
>C. ELEGANS:175855_AT
ggagccaaacacgtgctgggatggtaccgaaatggtcattttcacgacgatcatcaattc
aagattgttgattgcgcgcaacatggcgagctggttacttatgaagcttatcttggcgat
ctaaagtccagatttggagttgaggctcctatcccgacaaagatggaacagtttcaattt
cgggggtttctgctgactccaaagtcaaacaagaagccaatttccggaggtccgatggac
tcaacgagtgatgaagttccggaggaaactggaccaactgaagaaaagatggatgagaat
catgaaaatgattctaatgtggtcaggaaagacgaaccgccagcacacccaagaaagagc
tatatcgcaagcccggtatgtgttagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCCAAACACGTGCTGGGATGGT 172 523 82 Antisense
GGTCATTTTCACGACGATCATCAAT 401 503 115 Antisense
GATTGCGCGCAACATGGCGAGCTGG 131 435 151 Antisense
GAAGCTTATCTTGGCGATCTAAAGT 21 343 184 Antisense
TTGGAGTTGAGGCTCCTATCCCGAC 230 705 215 Antisense
TCAATTTCGGGGGTTTCTGCTGACT 340 633 255 Antisense
CAAGAAGCCAATTTCCGGAGGTCCG 239 167 291 Antisense
GGAGGTCCGATGGACTCAACGAGTG 135 517 307 Antisense
GTCAGGAAAGACGAACCGCCAGCAC 245 467 403 Antisense
CCGCCAGCACACCCAAGAAAGAGCT 84 263 418 Antisense
TCGCAAGCCCGGTATGTGTTAGCCA 594 599 446 Antisense
Sequence Source Affymetrix Proprietary Database