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[175853_s_at]

Description C36E6.C /REP_DB=WormBase Gene ID /WP=CE20543 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 12      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 50.3
(-2.2)
A 		9.1
(-3)
A 		32.7
(-2.6)
A 		336.9
(3)
P 		328
B 80.1
(3)
A 		27.3
(-1.4)
A 		8.3
(-3)
A 		70.4
(2.2)
A 		72
C 76
(-2.4)
A 		29.6
(-2.9)
A 		19
(-3)
A 		556.1
(3)
P 		537
avr 68.8
(-2) 		22
(-3) 		20
(-3) 		321.1
(3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 38.8
(1.2)
A 		19.6
(-1.1)
A 		54.2
(3)
P 		6.3
(-2.6)
A 		10.6
(-2.1)
A 		3.1
(-3)
A 		51
B 41.8
(3)
A 		29
(1)
A 		6.1
(-2.7)
A 		8.1
(-2.4)
A 		5.7
(-2.7)
A 		4.1
(-3)
A 		38
C 13.2
(-2.3)
A 		91.4
(3)
A 		3.3
(-3)
A 		5.8
(-2.8)
A 		19.1
(-1.9)
A 		5.1
(-2.9)
A 		88
avr 31.3
(0.8) 		46.7
(3) 		21.2
(-0.6) 		6.7
(-2.6) 		11.8
(-1.9) 		4.1
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 18.3
(-0.9)
A 		2
(-3)
A 		8.6
(-2.2)
A 		49.3
(3)
P 		47
B 25.5
(3)
A 		6.7
(-1.8)
A 		1.9
(-3)
A 		15
(0.3)
A 		24
C 25.2
(-1.7)
A 		8.5
(-2.9)
A 		6.6
(-3)
A 		93.8
(3)
P 		87
avr 23
(-0.8) 		5.7
(-3) 		5.7
(-3) 		52.7
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.2
(0.5)
A 		7
(0.4)
A 		11.8
(3)
P 		1.6
(-2.6)
A 		3.2
(-1.7)
A 		0.8
(-3)
A 		11
B 14.6
(3)
A 		9.7
(0.8)
A 		1.5
(-3)
A 		2.1
(-2.7)
A 		2.3
(-2.6)
A 		1.5
(-3)
A 		13
C 4.9
(-2.1)
A 		27.9
(3)
A 		0.8
(-3)
A 		1.2
(-2.9)
A 		6.2
(-1.8)
A 		1.7
(-2.8)
A 		27
avr 8.9
(0.4) 		14.9
(3) 		4.7
(-1.5) 		1.6
(-2.9) 		3.9
(-1.9) 		1.3
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175853_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19565
Sequence Type Exemplar sequence
Representative Public ID C36E6.C NCBI
Target Description C36E6.C /REP_DB=WormBase Gene ID /WP=CE20543 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000036940 ENSEMBL cdna:SNAP chromosome:CEL140:X:17441518:17448306:-1 11/11 None
GENEFINDER00000036961 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17441639:17447764:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036939 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17444296-17448014(-) 100.0 100.0
chrX:17441654-17446359(-) 92.67 92.67
chrX:17442195-17446224(-) 92.36 92.36
chrX:17441879-17446089(-) 91.99 91.99
chrX:17441652-17445594(-) 87.85 87.85
chrX:17442285-17446707(-) 86.68 86.68
chrX:17442060-17446561(-) 77.73 77.73
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast XP_498257 PREDICTED: similar to hypothetical protein Tb927.2.4050 [Homo sapiens] 9.0E-94
blast XP_374763 PREDICTED: hypothetical protein XP_374763 [Homo sapiens] 2.0E-53
blast EAL23916 LOC393076 [Homo sapiens] 2.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000036940 1 2072-2094
Sequence
Target Sequence 
>C. ELEGANS:175853_S_AT
gatggagtcgaagtgctctctgtcgtactcgaagcagtgctggtgggtggagtcgaagtg
ctttccgtcgtactcgaagcagtgctggtggatggagtcgaagtgccttctgtcgtactc
gaagcagtgctggtggatggagtcgaagtgttttctgccgtactcgaagcagtgctggtg
gatggagtcgaagtgctttctgtcgtactcgaagcagtgctggtggatggagtcgaagtg
ctctctgttgtactcgaagcagtgctggtggatggagtcgaagtgctttctgtcgtactc
gaagcagtgctggtggatggagtcaaagtgctctctgttgtactcgaagcagtgctggtg
gatggaatcgaagtgctttctgtagtactccaagcagtgctggtcgatggagtcgaagtg
ctttctgtcgtactcgaaccagtgctggtgtatggagtcgaagtgctttctgtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGAGTCGAAGTGCTCTCTGTCG 453 407 2950 Antisense
GCTCTCTGTCGTACTCGAAGCAGTG 32 301 2964 Antisense
TGGAGTCGAAGTGCTTTCCGTCGTA 659 549 2997 Antisense
TTCCGTCGTACTCGAAGCAGTGCTG 564 691 3012 Antisense
AGTCGAAGTGCTTTCTGTCGTACTC 241 61 3135 Antisense
AGTCGAAGTGCTCTCTGTTGTACTC 240 61 3180 Antisense
GAGTCGAAGTGCTTTCTGTCGTACT 651 399 3224 Antisense
CTGTCGTACTCGAAGCAGTGCTGGT 678 239 3239 Antisense
GCTCTCTGTTGTACTCGAAGCAGTG 33 301 3279 Antisense
GGAGTCGAAGTGCTTTCTGTCGTAC 304 517 3358 Antisense
ATGGAGTCGAAGTGCTTTCTGTCGT 565 51 3401 Antisense
Sequence Source Affymetrix Proprietary Database