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[175852_at]

Description R05G9.B /REP_DB=WormBase Gene ID /WP=CE21108 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 79      4grp_total > 18      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 38.4
(0)
A 		33.1
(-0.5)
A 		6.5
(-3)
A 		70.2
(3)
A 		64
B 27.9
(-1.1)
A 		24.9
(-3)
A 		34.5
(3)
A 		30.4
(0.4)
A 		10
C 26.6
(-3)
A 		57.8
(1.1)
P 		46.4
(-0.4)
P 		72
(3)
M 		45
avr 31
(-2.6) 		38.6
(-1) 		29.1
(-3) 		57.5
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 30.5
(-1.9)
A 		11.6
(-2.7)
A 		49.3
(-1.1)
A 		4.1
(-3)
A 		84.1
(0.3)
A 		149.2
(3)
P 		145
B 39.1
(-1.9)
A 		22.8
(-2.7)
A 		28.5
(-2.5)
P 		17.4
(-3)
A 		62
(-0.8)
P 		140.3
(3)
P 		123
C 15.9
(-2.7)
A 		62.2
(-0.9)
A 		7.2
(-3)
A 		6.8
(-3)
A 		83
(-0.2)
A 		167.4
(3)
P 		161
avr 28.5
(-2.2) 		32.2
(-2) 		28.3
(-2.2) 		9.4
(-3) 		76.4
(-0.2) 		152.3
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14
(3)
A 		7.2
(-0.3)
A 		1.7
(-3)
A 		10.3
(1.2)
A 		12
B 8.9
(3)
A 		6.1
(-3)
A 		8
(1.1)
A 		6.5
(-2.1)
A 		3
C 8.8
(-3)
A 		16.6
(3)
P 		16.2
(2.7)
P 		12.1
(-0.5)
M 		8
avr 10.6
(3) 		10
(1.2) 		8.6
(-3) 		9.6
(0) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 5.6
(-2.2)
A 		4.1
(-2.5)
A 		10.7
(-1.4)
A 		1
(-3)
A 		25.4
(1.1)
A 		36.3
(3)
P 		35
B 13.6
(-1.9)
A 		7.6
(-2.6)
A 		6.9
(-2.7)
P 		4.6
(-3)
A 		25.2
(-0.4)
P 		52.3
(3)
P 		48
C 5.9
(-2.5)
A 		19
(-1.1)
A 		1.8
(-3)
A 		1.4
(-3)
A 		26.9
(-0.2)
A 		56
(3)
P 		55
avr 8.4
(-2.2) 		10.2
(-2) 		6.5
(-2.5) 		2.3
(-3) 		25.8
(0.1) 		48.2
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175852_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18884
Sequence Type Exemplar sequence
Representative Public ID R05G9.B NCBI
Target Description R05G9.B /REP_DB=WormBase Gene ID /WP=CE21108 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062913 NCBI Caenorhabditis elegans R05G9.3 (R05G9.3) mRNA, complete cds. 11/11 None
SNAP00000037107 ENSEMBL cdna:SNAP chromosome:CEL140:II:6500644:6501464:-1 11/11 None
GENEFINDER00000037111 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6499416:6501464:-1 9/11 None
R05G9.3 ENSEMBL cdna:known chromosome:CEL140:II:6500644:6501464:-1 gene:R05G9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6500640-6501461(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05G9.3
Entrez Gene 187627 Entrez gene
SwissProt Q966H1 EMBL-EBI
WormBase CE21108 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68393 Hypothetical protein R05G9.3 [Caenorhabditis elegans] ref|NP_495314.1| R05G9.3 [Caenorhabditis elegans] 1.0E-104
blast AAK68393 Hypothetical protein R05G9.3 [Caenorhabditis elegans] ref|NP_495314.1| R05G9.3 [Caenorhabditis elegans] 5.0E-90
blast CAE59333 Hypothetical protein CBG02677 [Caenorhabditis briggsae] 7.0E-22
blast CAE59333 Hypothetical protein CBG02677 [Caenorhabditis briggsae] 2.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495314.1 2 7-29,156-178
R05G9.3 2 7-29,156-178
SNAP00000037107 2 7-29,156-178
GENEFINDER00000037111 3 7-29,127-149,156-178
Sequence
Target Sequence 
>C. ELEGANS:175852_AT
actgtatcgctttattggttgctttgatgatggcattaacatcaattattattctttccg
atgctccacacaactcgatggaattctcaactcttccaaaaaatgtgcaaaacgagattt
ctttatttgcggaaagtcgattccacgaattcgaagcaaagcaggcactggaacttgaac
catatagaacgacacatctgatgcttcacatcatgccagagatctgcacggatggtaata
aagcaagacaaagcggaccttggccagaatatgaagaacaatactattgtgcatcaaccc
cagttgccaactggtgcgatggataccgtaatatgcacaaagcaaccgaaagtgttatct
caatgcctgggggatatgaattggttgccagtttctcttgtttaagaataatgccttgga
ttcgacgagtgaaagacttcaacatttcattgatcagtgtcatcgtcactatcattgtca
ctttaatgtgttacttgttcttcagctcgaatacgaatgacgaggacaacaacaccctcg
atgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGTATCGCTTTATTGGTTGCTTT 636 97 41 Antisense
AATTATTATTCTTTCCGATGCTCCA 402 175 84 Antisense
CAACTCGATGGAATTCTCAACTCTT 146 189 111 Antisense
GATGCTTCACATCATGCCAGAGATC 595 413 240 Antisense
AGACAAAGCGGACCTTGGCCAGAAT 47 73 286 Antisense
ACTATTGTGCATCAACCCCAGTTGC 483 95 323 Antisense
AAGTGTTATCTCAATGCCTGGGGGA 512 159 390 Antisense
GAATTGGTTGCCAGTTTCTCTTGTT 642 323 418 Antisense
GTCATCGTCACTATCATTGTCACTT 572 467 499 Antisense
AATGTGTTACTTGTTCTTCAGCTCG 29 163 525 Antisense
AGGACAACAACACCCTCGATGATGA 560 55 563 Antisense
Sequence Source Affymetrix Proprietary Database