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[175851_s_at] phosphate transporter

Description C36E6.A /REP_DB=WormBase Gene ID /WP=CE20541 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 15      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 41      6grp_total > 16      4grp_total > 45      6grp_highest_sub > 01_02      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 772
(0.9)
P 		912.5
(3)
P 		648.2
(-0.9)
P 		503.1
(-3)
P 		409
B 880.5
(3)
P 		718.7
(0.7)
P 		450.4
(-3)
P 		568.6
(-1.4)
P 		430
C 809.2
(3)
P 		674.5
(0.1)
P 		525.8
(-3)
P 		541.3
(-2.7)
P 		283
avr 820.6
(3) 		768.6
(1.9) 		541.5
(-2.9) 		537.7
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 576
1 2 3 4 5 6 range
A 948.7
(3)
P 		668.1
(-1.4)
P 		627.8
(-2)
P 		607.3
(-2.3)
P 		691.4
(-1)
P 		563.8
(-3)
P 		385
B 1006.7
(3)
P 		807.9
(0.9)
P 		430.5
(-3)
P 		679
(-0.4)
P 		640.9
(-0.8)
P 		676.4
(-0.4)
P 		576
C 601.8
(-2.7)
P 		924.7
(3)
P 		661.7
(-1.7)
P 		594
(-2.9)
P 		587.4
(-3)
P 		587
(-3)
P 		338
avr 852.4
(3) 		800.2
(1.9) 		573.3
(-3) 		626.8
(-1.8) 		639.9
(-1.6) 		609.1
(-2.2) 		279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 281.1
(3)
P 		198.1
(0.6)
P 		169.4
(-0.2)
P 		73.6
(-3)
P 		208
B 280.8
(3)
P 		177.5
(-0.5)
P 		104.4
(-3)
P 		121.2
(-2.4)
P 		176
C 267.9
(3)
P 		193.9
(0.5)
P 		183.3
(0.1)
P 		91.3
(-3)
P 		177
avr 276.6
(3) 		189.8
(0.1) 		152.4
(-1.1) 		95.4
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 174.9
(-0.7)
P 		237.6
(3)
P 		136.7
(-3)
P 		154
(-2)
P 		208.6
(1.3)
P 		137.3
(-3)
P 		101
B 350.3
(3)
P 		268.9
(1)
P 		104.5
(-3)
P 		179.8
(-1.2)
P 		260.4
(0.8)
P 		252.2
(0.6)
P 		246
C 223.1
(0.8)
P 		282.1
(3)
P 		168.4
(-1.2)
P 		119.5
(-3)
P 		190.1
(-0.4)
P 		196.5
(-0.2)
P 		163
avr 249.4
(2.4) 		262.9
(3) 		136.5
(-3) 		151.1
(-2.3) 		219.7
(0.9) 		195.3
(-0.2) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175851_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19567
Sequence Type Exemplar sequence
Representative Public ID C36E6.A NCBI
Target Description C36E6.A /REP_DB=WormBase Gene ID /WP=CE20541 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078429 NCBI Caenorhabditis elegans ZK54.1 (ZK54.1) mRNA, complete cds. 11/11 A 
SNAP00000019861 ENSEMBL cdna:SNAP chromosome:CEL140:X:17460837:17464781:-1 11/11 None
GENEFINDER00000019863 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17460967:17464781:-1 10/11 None
ZK54.1.1 ENSEMBL cdna:known chromosome:CEL140:X:17460537:17464009:-1 gene:ZK54.1 11/11 A 
ZK54.1.2 ENSEMBL cdna:known chromosome:CEL140:X:17460701:17463957:-1 gene:ZK54.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17460835-17461577(-) 100.0 100.0
Public Domain and Genome References
Gene Title phosphate transporter
Ensembl ZK54.1
Entrez Gene 181777 Entrez gene
SwissProt Q23514 EMBL-EBI
WormBase CE31271 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16286_AT sugar transporter family protein at
ATH1-121501:255691_AT sugar transporter family protein at
DROSOPHILA_2:1633405_S_AT dm
DROSGENOME1:152929_AT dm
Protein Similarities
Method ID Description E-Value
blast AAM69081 Hypothetical protein ZK54.1 [Caenorhabditis elegans] ref|NP_510830.2| ZK54.1 [Caenorhabditis elegans] 0.0
blast CAE58686 Hypothetical protein CBG01860 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510830.2 11 42-64,94-116,123-145,149-171,183-205,210-229,310-328,343-365,372-393,408-430,435-457
ZK54.1.1 11 42-64,94-116,123-145,149-171,183-205,210-229,310-328,343-365,372-393,408-430,435-457
ZK54.1.2 11 42-64,94-116,123-145,149-171,183-205,210-229,310-328,343-365,372-393,408-430,435-457
SNAP00000019861 11 37-59,89-111,118-140,144-166,178-200,205-224,305-323,338-360,367-388,403-425,430-452
GENEFINDER00000019863 10 37-59,89-111,118-140,144-166,178-200,205-224,305-323,338-360,367-389,409-431
Sequence
Target Sequence 
>C. ELEGANS:175851_S_AT
tggaattgccagtagtctgccgtacttcttgatgggattccaaattattactggagggca
gctgtgcgactacttgagacgggataagcattacgacacacttttcgtgagaaaaatggc
ttgcgcattaggtttcatcggtcaatctgtgtttctcttccttgttatgaccacctctaa
ctcgctgcttctggtccttttcttctcaatttccatcggactaggcggaatttgttggtg
tggattttcagtaaatcatctggatttggccccacagtatgctggacatttgatggccac
gtcgaacacatttgcgacaattcctggaattttcggacctcttctagttggagcaattgt
gcaaaatgggacaatcggtgagtggaacgtgatcatgtacatcataatatctgcttatct
gctcggagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATTGCCAGTAGTCTGCCGTAC 19 547 51 Antisense
AGTCTGCCGTACTTCTTGATGGGAT 582 59 64 Antisense
GCAGCTGTGCGACTACTTGAGACGG 43 315 108 Antisense
GCTTGCGCATTAGGTTTCATCGGTC 45 307 169 Antisense
TCATCGGTCAATCTGTGTTTCTCTT 600 621 185 Antisense
TTCCTTGTTATGACCACCTCTAACT 234 701 208 Antisense
TTTTCTTCTCAATTTCCATCGGACT 184 677 248 Antisense
CATCTGGATTTGGCCCCACAGTATG 525 211 307 Antisense
TGATGGCCACGTCGAACACATTTGC 240 567 341 Antisense
TTTTCGGACCTCTTCTAGTTGGAGC 374 665 380 Antisense
AATATCTGCTTATCTGCTCGGAGCT 127 173 456 Antisense
Sequence Source Affymetrix Proprietary Database