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[175849_at]

Description T13G4.F /REP_DB=WormBase Gene ID /WP=CE25999 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 08      4grp_total > 34      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 97.2
(2)
A 		57.5
(-3)
A 		82.8
(0.2)
A 		104.7
(3)
A 		47
B 53.8
(-3)
A 		108.4
(3)
A 		79
(-0.2)
A 		102.4
(2.3)
P 		55
C 91.7
(-1.9)
A 		144.2
(3)
P 		108.9
(-0.3)
A 		79.9
(-3)
A 		64
avr 80.9
(-3) 		103.4
(3) 		90.2
(-0.5) 		95.7
(0.9) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 225.9
(3)
A 		69.5
(-2.6)
A 		75.8
(-2.4)
A 		63.5
(-2.8)
A 		102.6
(-1.4)
P 		58.5
(-3)
A 		167
B 81.8
(0.9)
A 		32.2
(-3)
A 		108.5
(3)
A 		63
(-0.6)
A 		62.9
(-0.6)
A 		51.2
(-1.5)
A 		76
C 77
(-1.1)
A 		86.3
(-0.2)
A 		96.3
(0.8)
A 		118
(3)
A 		57.9
(-3)
P 		78.8
(-0.9)
A 		60
avr 128.2
(3) 		62.7
(-3) 		93.5
(-0.2) 		81.5
(-1.3) 		74.5
(-1.9) 		62.8
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 35.4
(3)
A 		12.5
(-3)
A 		21.7
(-0.6)
A 		15.3
(-2.3)
A 		23
B 17.2
(-3)
A 		26.8
(3)
A 		18.3
(-2.3)
A 		21.8
(-0.1)
P 		10
C 30.4
(0.6)
A 		41.4
(3)
P 		38
(2.3)
A 		13.5
(-3)
A 		28
avr 27.7
(3) 		26.9
(2.6) 		26
(2.1) 		16.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 41.6
(3)
A 		24.7
(-0.7)
A 		16.5
(-2.5)
A 		16.1
(-2.6)
A 		31
(0.7)
P 		14.2
(-3)
A 		27
B 28.5
(3)
A 		10.7
(-3)
A 		26.4
(2.3)
A 		16.7
(-1)
A 		25.5
(2)
A 		19.1
(-0.2)
A 		18
C 28.5
(3)
A 		26.3
(1.7)
A 		24.5
(0.6)
A 		23.7
(0.1)
A 		18.7
(-3)
P 		26.4
(1.7)
A 		10
avr 32.9
(3) 		20.6
(-2.2) 		22.5
(-1.4) 		18.8
(-3) 		25.1
(-0.3) 		19.9
(-2.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19594
Sequence Type Exemplar sequence
Representative Public ID T13G4.F NCBI
Target Description T13G4.F /REP_DB=WormBase Gene ID /WP=CE25999 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075821 NCBI Caenorhabditis elegans T13G4.2 (T13G4.2) mRNA, complete cds. 11/11 None
T13G4.2 ENSEMBL cdna:known chromosome:CEL140:X:1181731:1183298:1 gene:T13G4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044624 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1181730-1183298(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13G4.2
Entrez Gene 180470 Entrez gene
SwissProt Q966F7 EMBL-EBI
WormBase CE25999 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84571 Hypothetical protein T13G4.2 [Caenorhabditis elegans] ref|NP_508222.1| T13G4.2 [Caenorhabditis elegans] 1.0E-78
Sequence
Target Sequence 
>C. ELEGANS:175849_AT
aaaaccagaggcttggcgacgactgggggtccctgcaatcccttggagaccgtccgcata
tatcagagaagacagcccgatgtcgtcgacgcgaggagcttggagaaggggaaaagcttc
tattgcaaccacaaaaaagggggatcgagaggggggtgtactatcgccctctcaacttca
ccgaccattgcttcaaaatgaccccatcagcaaatattggaacaatgccttgcagtcatt
cgatgtgtgtgaccgtcattgagccgagaattttagcagctagttttcaaatctaccttt
atttcattttaaaatggccccgttttcatttttgcggtcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACCAGAGGCTTGGCGACGACTG 422 131 26 Antisense
GAGACCGTCCGCATATATCAGAGAA 449 393 71 Antisense
AGAGAAGACAGCCCGATGTCGTCGA 346 69 90 Antisense
TGTCGTCGACGCGAGGAGCTTGGAG 646 555 106 Antisense
GGGAAAAGCTTCTATTGCAACCACA 708 493 134 Antisense
GAGAGGGGGGTGTACTATCGCCCTC 23 395 172 Antisense
CTTCACCGACCATTGCTTCAAAATG 387 221 201 Antisense
GCCTTGCAGTCATTCGATGTGTGTG 642 281 252 Antisense
GTGTGACCGTCATTGAGCCGAGAAT 607 485 272 Antisense
GCAGCTAGTTTTCAAATCTACCTTT 474 299 301 Antisense
GCCCCGTTTTCATTTTTGCGGTCAT 425 285 342 Antisense
Sequence Source Affymetrix Proprietary Database