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[175848_at]

Description R05G9.E /REP_DB=WormBase Gene ID /WP=CE21110 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 45      4grp_total > 27      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 15.5
(-1.9)
A 		8.2
(-3)
A 		47.7
(3)
A 		12
(-2.4)
A 		40
B 28.5
(-2.8)
A 		71.7
(3)
A 		27
(-3)
A 		52.9
(0.5)
A 		45
C 52
(2.3)
A 		38.9
(0.1)
A 		21
(-3)
A 		55.8
(3)
A 		35
avr 32
(-2.9) 		39.6
(2.6) 		31.9
(-3) 		40.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 5.9
(-3)
A 		47.3
(3)
A 		28.5
(0.3)
A 		24.5
(-0.3)
A 		6.4
(-2.9)
A 		41.4
(2.1)
A 		41
B 7.3
(-2.4)
A 		30
(1.1)
A 		42.7
(3)
A 		3
(-3)
A 		22.1
(-0.1)
A 		39.7
(2.5)
A 		40
C 43.4
(3)
A 		38.3
(2.2)
A 		33
(1.3)
A 		5.6
(-3)
A 		7
(-2.8)
A 		8.9
(-2.5)
A 		38
avr 18.9
(-1.3) 		38.5
(3) 		34.7
(2.2) 		11
(-3) 		11.8
(-2.8) 		30
(1.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.6
(-0.9)
A 		1.8
(-3)
A 		12.5
(3)
A 		1.8
(-3)
A 		11
B 9.1
(-1.5)
A 		17.7
(3)
A 		6.3
(-3)
A 		11.3
(-0.4)
A 		11
C 17.2
(3)
A 		11.2
(-0.6)
A 		7.3
(-3)
A 		9.4
(-1.7)
A 		10
avr 10.6
(3) 		10.2
(2.2) 		8.7
(-0.7) 		7.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.1
(-3)
A 		16.8
(3)
A 		6.2
(-1.1)
A 		6.2
(-1.1)
A 		1.9
(-2.7)
A 		10.1
(0.4)
A 		16
B 2.5
(-2.3)
A 		10
(0.9)
A 		10.4
(1.1)
A 		0.8
(-3)
A 		9
(0.5)
A 		14.8
(3)
A 		14
C 16.1
(3)
A 		11.7
(1.2)
A 		8.4
(-0.1)
A 		1.1
(-3)
A 		2.3
(-2.5)
A 		3
(-2.2)
A 		15
avr 6.6
(-0.7) 		12.8
(3) 		8.3
(0.3) 		2.7
(-3) 		4.4
(-2) 		9.3
(0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18887
Sequence Type Exemplar sequence
Representative Public ID R05G9.E NCBI
Target Description R05G9.E /REP_DB=WormBase Gene ID /WP=CE21110 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062914 NCBI Caenorhabditis elegans R05G9.1 (R05G9.1) mRNA, complete cds. 11/11 None
R05G9.1 ENSEMBL cdna:known chromosome:CEL140:II:6503114:6504522:1 gene:R05G9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037108 4/11 Cross Hyb Matching Probes None
SNAP00000037109 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6503110-6504519(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05G9.1
Entrez Gene 187625 Entrez gene
SwissProt Q966H0 EMBL-EBI
WormBase CE21110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68391 Hypothetical protein R05G9.1 [Caenorhabditis elegans] ref|NP_495315.1| R05G9.1 [Caenorhabditis elegans] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:175848_AT
gccgtccctctgcttggaagaaagctgtgtttttgtccattgaagccacacccacaacaa
gtcggacgtcttctggaacgatgtcgccgtgagaagatatgcgggggagagcgacggatt
caggattgttggcgacaaacatttggaaaatgtggagacgactattcagtggaagcacca
aagcaccacggatcgtctctcactactactactacggatcggctttcatgggagtttctg
gatcatggtgatccacctggatcgacgactttcgtggggagacagatggtctccgccact
gatttggaatccttccagagttttggcggcgtgagcggtttgtcccctgaagacattaaa
aatatagatagtgtttcggggtctgacactttgctcaactcttccatccttccaattttt
tggattactgtagtagcagtaatggtgcaaagcaccatggataggctcccatgggagttt
cgagcatatcagcaaattagcgacgcttcccgaggtaataccacatttaccgcagctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGTCCCTCTGCTTGGAAGAAAGC 684 283 25 Antisense
GTTTTTGTCCATTGAAGCCACACCC 99 449 53 Antisense
CACCCACAACAAGTCGGACGTCTTC 689 193 73 Antisense
GGACGTCTTCTGGAACGATGTCGCC 155 525 88 Antisense
ACGGATCGGCTTTCATGGGAGTTTC 135 93 238 Antisense
TCCGCCACTGATTTGGAATCCTTCC 315 597 316 Antisense
GAATCCTTCCAGAGTTTTGGCGGCG 437 261 331 Antisense
TTTCGGGGTCTGACACTTTGCTCAA 377 671 398 Antisense
CTCTTCCATCCTTCCAATTTTTTGG 14 231 423 Antisense
GCAAAGCACCATGGATAGGCTCCCA 608 315 471 Antisense
GTAATACCACATTTACCGCAGCTGC 125 463 539 Antisense
Sequence Source Affymetrix Proprietary Database