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[175847_at]

Description T13G4.A /REP_DB=WormBase Gene ID /WP=CE25995 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 08      4grp_total > 45      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 59.8
(0.3)
A 		50.5
(-1)
A 		36.5
(-3)
A 		79.1
(3)
A 		43
B 63.4
(3)
A 		59.2
(2.5)
A 		47.9
(1.2)
A 		12.4
(-3)
A 		51
C 70.7
(1.7)
A 		83.3
(3)
A 		26.3
(-3)
A 		37.8
(-1.8)
A 		57
avr 64.6
(3) 		64.3
(2.9) 		36.9
(-3) 		43.1
(-1.7) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 58.7
(2)
A 		66.9
(3)
A 		21.3
(-2.8)
A 		55.5
(1.5)
A 		23.1
(-2.6)
A 		20
(-3)
A 		47
B 75.7
(1.6)
A 		37
(-3)
A 		40
(-2.6)
A 		87.4
(3)
A 		50.2
(-1.4)
A 		37.2
(-3)
A 		50
C 62.5
(3)
A 		35.1
(-0.3)
A 		51.3
(1.6)
A 		23.3
(-1.7)
A 		12.9
(-3)
A 		22.8
(-1.8)
A 		50
avr 65.6
(3) 		46.3
(0) 		37.5
(-1.3) 		55.4
(1.4) 		28.7
(-2.7) 		26.7
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 21.8
(3)
A 		11
(-2.3)
A 		9.5
(-3)
A 		11.6
(-2)
A 		12
B 20.2
(3)
A 		14.6
(1.1)
A 		11.1
(-0.1)
A 		2.6
(-3)
A 		18
C 23.4
(2.8)
A 		24
(3)
A 		9.2
(-2)
A 		6.4
(-3)
A 		18
avr 21.8
(3) 		16.5
(0.9) 		9.9
(-1.8) 		6.9
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.8
(-1.1)
A 		23.8
(3)
A 		4.6
(-3)
A 		14.1
(-0)
A 		7
(-2.3)
A 		4.9
(-2.9)
A 		19
B 26.3
(3)
A 		12.3
(-2.1)
A 		9.7
(-3)
A 		23.1
(1.8)
A 		20.4
(0.9)
A 		13.9
(-1.5)
A 		17
C 23.2
(3)
A 		10.7
(-0.9)
A 		13
(-0.2)
A 		4.7
(-2.8)
A 		4.2
(-3)
A 		7.6
(-1.9)
A 		19
avr 20.1
(3) 		15.6
(0.6) 		9.1
(-2.8) 		14
(-0.2) 		10.5
(-2.1) 		8.8
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19619
Sequence Type Exemplar sequence
Representative Public ID T13G4.A NCBI
Target Description T13G4.A /REP_DB=WormBase Gene ID /WP=CE25995 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075826 NCBI Caenorhabditis elegans T13G4.7 (T13G4.7) mRNA, complete cds. 11/11 None
SNAP00000044622 ENSEMBL cdna:SNAP chromosome:CEL140:X:1202602:1203901:-1 11/11 None
GENEFINDER00000044625 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1202602:1203775:-1 11/11 None
T13G4.7 ENSEMBL cdna:known chromosome:CEL140:X:1203428:1203758:-1 gene:T13G4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1203427-1203758(-) 91.92 100.0
Public Domain and Genome References
Gene Title
Ensembl T13G4.7
Entrez Gene 188487 Entrez gene
SwissProt Q966F2 EMBL-EBI
WormBase CE25995 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84576 Hypothetical protein T13G4.7 [Caenorhabditis elegans] ref|NP_508227.1| T13G4.7 [Caenorhabditis elegans] 2.0E-24
blast AAK84576 Hypothetical protein T13G4.7 [Caenorhabditis elegans] ref|NP_508227.1| T13G4.7 [Caenorhabditis elegans] 7.0E-24
blast AAK84576 Hypothetical protein T13G4.7 [Caenorhabditis elegans] ref|NP_508227.1| T13G4.7 [Caenorhabditis elegans] 2.0E-23
Sequence
Target Sequence 
>C. ELEGANS:175847_AT
gccaccgccggcaaagaaaccgtgcgcccctgcaaatgggaacaacatgaacccctcgat
gacttcatctcaaccagcaaatgtggaacgctctcgggaaattccacaaaccggcagact
tacctcagcaaatgaggcttctcaacaacaaaatgtcccaccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACCGCCGGCAAAGAAACCGTGC 129 279 15 Antisense
GTGCGCCCCTGCAAATGGGAACAAC 458 479 36 Antisense
GGGAACAACATGAACCCCTCGATGA 177 495 52 Antisense
CCCTCGATGACTTCATCTCAACCAG 559 259 67 Antisense
GACTTCATCTCAACCAGCAAATGTG 610 371 75 Antisense
GCAAATGTGGAACGCTCTCGGGAAA 367 317 91 Antisense
GAACGCTCTCGGGAAATTCCACAAA 75 347 100 Antisense
ATTCCACAAACCGGCAGACTTACCT 481 7 115 Antisense
CGGCAGACTTACCTCAGCAAATGAG 642 241 126 Antisense
CAGCAAATGAGGCTTCTCAACAACA 659 203 140 Antisense
CTCAACAACAAAATGTCCCACCACA 344 227 155 Antisense
Sequence Source Affymetrix Proprietary Database