[Home] | [Total List]

[175846_at]

Description R05G9.A /REP_DB=WormBase Gene ID /WP=CE21107 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 11      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.5
(-0.8)
A 		19
(3)
A 		10.4
(-2)
A 		8.7
(-3)
A 		10
B 5.3
(-3)
A 		17.3
(3)
A 		8.6
(-1.4)
A 		8
(-1.7)
A 		12
C 11
(-0.7)
A 		15.7
(3)
A 		8.1
(-3)
A 		9.7
(-1.7)
A 		8
avr 9.6
(-2.4) 		17.3
(3) 		9
(-2.9) 		8.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 9
(-1.9)
A 		34.3
(3)
A 		4.4
(-2.8)
A 		4.4
(-2.8)
A 		10.5
(-1.6)
A 		3.4
(-3)
A 		31
B 8.9
(-2.1)
A 		10.1
(-1.8)
A 		28.1
(3)
A 		5.5
(-3)
A 		6.6
(-2.7)
A 		7.3
(-2.5)
A 		23
C 11.1
(-1.1)
A 		11.2
(-1.1)
A 		7.4
(-3)
A 		8
(-2.7)
A 		19.2
(3)
A 		14.5
(0.6)
A 		12
avr 9.7
(-1.2) 		18.5
(3) 		13.3
(0.5) 		6
(-3) 		12.1
(-0.1) 		8.4
(-1.8) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4.5
(3)
A 		4.1
(2.3)
A 		2.7
(-0.4)
A 		1.3
(-3)
A 		3
B 1.7
(-3)
A 		4.3
(3)
A 		2
(-2.3)
A 		1.7
(-3)
A 		3
C 3.6
(1.1)
A 		4.5
(3)
A 		2.8
(-0.5)
A 		1.6
(-3)
A 		3
avr 3.3
(0.9) 		4.3
(3) 		2.5
(-0.9) 		1.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.7
(-2.5)
A 		12.2
(3)
A 		1
(-2.9)
A 		1.1
(-2.8)
A 		3.2
(-1.7)
A 		0.8
(-3)
A 		11
B 3.1
(-1.2)
A 		3.4
(-0.8)
A 		6.8
(3)
A 		1.5
(-3)
A 		2.7
(-1.6)
A 		2.7
(-1.6)
A 		5
C 4.1
(0.3)
A 		3.4
(-0.7)
A 		1.9
(-2.6)
A 		1.6
(-3)
A 		6.2
(3)
A 		4.8
(1.2)
A 		5
avr 3
(-1) 		6.3
(3) 		3.2
(-0.8) 		1.4
(-3) 		4
(0.2) 		2.8
(-1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175846_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18890
Sequence Type Exemplar sequence
Representative Public ID R05G9.A NCBI
Target Description R05G9.A /REP_DB=WormBase Gene ID /WP=CE21107 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000037113 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6503600:6504007:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062914 9/11 Negative Strand Matching Probes A 
R05G9.1 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6503596-6504004(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175846_AT
tcaacaatgctgaagtccctacctgcggtaaatgtggtattacctcgggaagcgtcgcta
atttgctgatatgctcgaaactcccatgggagcctatccatggtgctttgcaccattact
gctactacagtaatccaaaaaattggaaggatggaagagttgagcaaagtgtcagacccc
gaaacactatctatatttttaatgtcttcaggggacaaactggagtaatgattgagagat
gtacacggaatgcccgaatccccacccgctcacgccgccaaaactctggaaggattccaa
atcagtggcggagaccatctgtctccccacgaaagtcgtcgatccagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACAATGCTGAAGTCCCTACCTG 404 629 29 Antisense
TGGTATTACCTCGGGAAGCGTCGCT 431 541 63 Antisense
GCGTCGCTAATTTGCTGATATGCTC 28 293 80 Antisense
TGATATGCTCGAAACTCCCATGGGA 471 563 95 Antisense
ATGGGAGCCTATCCATGGTGCTTTG 449 49 114 Antisense
TGCTTTGCACCATTACTGCTACTAC 327 579 132 Antisense
GTGTCAGACCCCGAAACACTATCTA 76 483 197 Antisense
ATGTACACGGAATGCCCGAATCCCC 561 43 267 Antisense
TCACGCCGCCAAAACTCTGGAAGGA 560 623 298 Antisense
AATCAGTGGCGGAGACCATCTGTCT 266 171 328 Antisense
TCCCCACGAAAGTCGTCGATCCAGG 64 597 352 Antisense
Sequence Source Affymetrix Proprietary Database