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[175843_s_at] ubiquitin-conjugating enzyme

Description g4038451 /REP_DB=GenBank Identifier /GB=AF106565.1 /PROTEIN_GB=AAC97374.1 /CHR=4 /FEA=Mapped Transcript /DEF=ubiquitin-conjugating enzyme 9 homolog
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 31      6grp_total > 07      4grp_total > 61      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 675
1 2 3 4 range
A 1106.3
(3)
P 		1026.4
(2.1)
P 		961
(1.4)
P 		556.9
(-3)
P 		549
B 1111.7
(3)
P 		832
(0.1)
P 		991.5
(1.8)
P 		533.8
(-3)
P 		578
C 1208.8
(3)
P 		952.5
(0.7)
P 		1064.9
(1.7)
P 		552.2
(-3)
P 		657
avr 1142.3
(3) 		937
(0.9) 		1005.8
(1.6) 		547.6
(-3) 		595

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 611
1 2 3 4 5 6 range
A 1168.4
(3)
P 		856.7
(-0.6)
P 		1045.4
(1.6)
P 		870.3
(-0.4)
P 		664.2
(-2.7)
P 		641.8
(-3)
P 		527
B 1069
(3)
P 		878.3
(0.7)
P 		978.7
(1.9)
P 		944.7
(1.5)
P 		571.8
(-3)
P 		870.1
(0.6)
P 		497
C 1032.8
(3)
P 		847.9
(0.7)
P 		925.6
(1.6)
P 		773.1
(-0.3)
P 		557.9
(-3)
P 		810.9
(0.2)
P 		475
avr 1090.1
(3) 		861
(0.2) 		983.2
(1.7) 		862.7
(0.2) 		598
(-3) 		774.3
(-0.9) 		492
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 402.8
(3)
P 		222.8
(-0.4)
P 		251.2
(0.2)
P 		81.5
(-3)
P 		321
B 354.5
(3)
P 		205.5
(-0.7)
P 		229.8
(-0.1)
P 		113.8
(-3)
P 		241
C 400.2
(3)
P 		273.8
(0.5)
P 		371.1
(2.4)
P 		93.1
(-3)
P 		307
avr 385.8
(3) 		234
(-0.1) 		284
(0.9) 		96.1
(-3) 		290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 215.4
(-0.6)
P 		304.7
(3)
P 		227.7
(-0.1)
P 		220.7
(-0.4)
P 		200.4
(-1.2)
P 		156.3
(-3)
P 		148
B 372
(3)
P 		292.4
(-0.4)
P 		237.7
(-2.8)
P 		250.2
(-2.2)
P 		232.3
(-3)
P 		324.5
(1)
P 		140
C 382.8
(3)
P 		258.7
(-0.3)
P 		235.6
(-0.9)
P 		155.5
(-3)
P 		180.5
(-2.3)
P 		271.5
(0.1)
P 		227
avr 323.4
(3) 		285.3
(1.1) 		233.7
(-1.5) 		208.8
(-2.8) 		204.4
(-3) 		250.8
(-0.7) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175843_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19884
Sequence Type Exemplar sequence
Representative Public ID 4038451 NCBI
Target Description g4038451 /REP_DB=GenBank Identifier /GB=AF106565.1 /PROTEIN_GB=AAC97374.1 /CHR=4 /FEA=Mapped Transcript /DEF=ubiquitin-conjugating enzyme 9 homolog
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027987 NCBI Caenorhabditis elegans UBiquitin Conjugating enzyme family member (ubc-9) (ubc-9) mRNA, complete cds. 11/11 None
F29B9.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:4651029:4652645:1 gene:F29B9.6 11/11 None
F29B9.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:4651035:4652645:1 gene:F29B9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034763 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034771 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4651037-4652125(+) 100.0 100.0
Public Domain and Genome References
Gene Title ubiquitin-conjugating enzyme
Gene Symbol ubc-9
Ensembl F29B9.6
Entrez Gene 3565767 Entrez gene
SwissProt Q95017 EMBL-EBI
WormBase CE09784 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251561_AT ubiquitin-conjugating enzyme, putative at
CHICKEN:GGA.4940.2.S1_A_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) gga
HG-U95AV2:38480_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133_PLUS_2:211008_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133A:211008_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133A_2:211008_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133_PLUS_2:233360_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133B:233360_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HC-G110:838_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U95AV2:838_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HUGENEFL:U45328_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
U133_X3P:G12653902_3P_X_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
U133_X3P:HS2.302903.1.S1_3P_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
U133_X3P:HS.84285.3.A1_3P_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
U133_X3P:HS.84285.2.S1_3P_A_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
U133_X3P:211008_3P_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
U133_X3P:1558088_3P_A_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133_PLUS_2:1558088_A_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133A_2:213535_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-FOCUS:213535_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133_PLUS_2:213535_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133A:213535_S_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U95E:80662_AT ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133_PLUS_2:208760_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133A_2:208760_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133A:208760_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HU35KSUBD:RC_AA490484_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
U133_X3P:HS.84285.0.A2_3P_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U95AV2:33136_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133A_2:213536_S_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133_PLUS_2:213536_S_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HG-U133A:213536_S_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
HU35KSUBA:N36588_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
U133_X3P:HS.84285.2.A1_3P_A_AT Ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) hs
MOE430A:1422714_AT ubiquitin-conjugating enzyme E2I mm
MOUSE430_2:1422714_AT ubiquitin-conjugating enzyme E2I mm
MOUSE430A_2:1422714_AT ubiquitin-conjugating enzyme E2I mm
MOE430A:1422712_A_AT ubiquitin-conjugating enzyme E2I mm
MOUSE430_2:1422712_A_AT ubiquitin-conjugating enzyme E2I mm
MOUSE430A_2:1422712_A_AT ubiquitin-conjugating enzyme E2I mm
MOUSE430_2:1422713_A_AT ubiquitin-conjugating enzyme E2I mm
MOE430A:1422713_A_AT ubiquitin-conjugating enzyme E2I mm
MOUSE430A_2:1422713_A_AT ubiquitin-conjugating enzyme E2I mm
MOUSE430_2:1429545_AT ubiquitin-conjugating enzyme E2I mm
MOE430B:1429545_AT ubiquitin-conjugating enzyme E2I mm
MU11KSUBA:U76416_S_AT ubiquitin-conjugating enzyme E2I mm
MG-U74AV2:97530_AT ubiquitin-conjugating enzyme E2I mm
MG-U74BV2:107897_AT ubiquitin-conjugating enzyme E2I mm
MOE430A:1425478_X_AT ubiquitin-conjugating enzyme E2I mm
MOUSE430A_2:1425478_X_AT ubiquitin-conjugating enzyme E2I mm
MOUSE430_2:1425478_X_AT ubiquitin-conjugating enzyme E2I mm
MOE430B:1453189_AT ubiquitin-conjugating enzyme E2I mm
MOUSE430_2:1453189_AT ubiquitin-conjugating enzyme E2I mm
MG-U74CV2:169442_I_AT Ubiquitin-conjugating enzyme E2I, mRNA (cDNA clone MGC:46871 IMAGE:4951933) mm
MU19KSUBA:TC20016_AT Ubiquitin-conjugating enzyme E2I, mRNA (cDNA clone MGC:46871 IMAGE:4951933) mm
MU19KSUBB:TC31133_F_AT Ubiquitin-conjugating enzyme E2I, mRNA (cDNA clone MGC:46871 IMAGE:4951933) mm
MU19KSUBC:TC35975_AT Ubiquitin-conjugating enzyme E2I, mRNA (cDNA clone MGC:46871 IMAGE:4951933) mm
RG-U34A:U54632_AT ubiquitin-conjugating enzyme E2I rn
RG-U34A:U54632_G_AT ubiquitin-conjugating enzyme E2I rn
RAE230A:1370250_AT ubiquitin-conjugating enzyme E2I rn
RAT230_2:1370250_AT ubiquitin-conjugating enzyme E2I rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4840 ubiquitin conjugating enzyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_001023158 UBiquitin Conjugating enzyme family member (ubc-9) [Caenorhabditis elegans] gb|AAK67232.1| Ubiquitin conjugating enzyme protein 9 [Caenorhabditis elegans] sp|Q95017|UBC9_CAEEL Ubiquitin-conjugating enzyme E2 9 (Ubiquitin-protein ligase 9) (Ubiquitin carrier protein 9) gb|AAC97374.1| ubiquitin-conjugating enzyme 9 homolog [Caenorhabditis elegans] 3.0E-96
blast CAE58558 Hypothetical protein CBG01720 [Caenorhabditis briggsae] 1.0E-94
blast CAE61383 Hypothetical protein CBG05231 [Caenorhabditis briggsae] 4.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 1.0E-70
Sequence
Target Sequence 
>C. ELEGANS:175843_S_AT
gctgtgaagtatgctgccgaactcgtccagaagcaaatgctcgagtagatgcttgcttcg
tggtagtcgtctattctattctcctttttcctcccatcctcatttcatttagttaactat
ttctgtatgcggcaacgattgttgacacaactcgaaattcgagcaccgaagcaacttttc
tgatatcttttatttcaatctaaccaaaagctttgtcgtgcctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTGAAGTATGCTGCCGAACTCG 558 295 484 Antisense
GCCGAACTCGTCCAGAAGCAAATGC 185 283 499 Antisense
AAATGCTCGAGTAGATGCTTGCTTC 592 119 518 Antisense
ATGCTTGCTTCGTGGTAGTCGTCTA 187 41 532 Antisense
TGGTAGTCGTCTATTCTATTCTCCT 75 553 544 Antisense
AACTATTTCTGTATGCGGCAACGAT 603 139 598 Antisense
GCGGCAACGATTGTTGACACAACTC 536 293 612 Antisense
TTCGAGCACCGAAGCAACTTTTCTG 523 695 641 Antisense
GAAGCAACTTTTCTGATATCTTTTA 111 341 651 Antisense
ATATCTTTTATTTCAATCTAACCAA 675 19 666 Antisense
AACCAAAAGCTTTGTCGTGCCTGGT 205 145 685 Antisense
Sequence Source GenBank