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[175840_s_at]

Description g3212083 /REP_DB=GenBank Identifier /GB=AF068867.1 /PROTEIN_GB=AAC35506.1 /CHR=X /FEA=Mapped Transcript /DEF=putative actin-binding protein UNC-115
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 15      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 11      6grp_total > 15      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1666
1 2 3 4 range
A 2301.9
(3)
P 		1916
(1.6)
P 		1736.2
(1)
P 		636.2
(-3)
P 		1666
B 2273.4
(3)
P 		1856.4
(1.3)
P 		1571.1
(0.1)
P 		834.2
(-3)
P 		1439
C 1962.8
(3)
P 		1897.5
(2.7)
P 		1592.8
(1.2)
P 		737.3
(-3)
P 		1226
avr 2179.4
(3) 		1890
(1.8) 		1633.4
(0.7) 		735.9
(-3) 		1444

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1762
1 2 3 4 5 6 range
A 2805.2
(3)
P 		1831
(-0.4)
P 		1315.3
(-2.1)
P 		1210.6
(-2.5)
P 		1743.4
(-0.7)
P 		1068.3
(-3)
P 		1737
B 1885.7
(0.8)
P 		2366.1
(3)
P 		1388.3
(-1.4)
P 		1666.9
(-0.2)
P 		1229.4
(-2.2)
P 		1043.5
(-3)
P 		1323
C 2167.3
(3)
P 		2128.5
(2.8)
P 		1910.4
(1.5)
P 		1139.6
(-3)
P 		1342.7
(-1.8)
P 		1153.3
(-2.9)
P 		1028
avr 2286.1
(3) 		2108.5
(2.1) 		1538
(-0.7) 		1339
(-1.7) 		1438.5
(-1.2) 		1088.4
(-3) 		1198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 745
1 2 3 4 range
A 838.1
(3)
P 		415.9
(-0.4)
P 		453.9
(-0.1)
P 		93.1
(-3)
P 		745
B 725
(3)
P 		458.5
(0.1)
P 		364.1
(-1)
P 		177.8
(-3)
P 		547
C 649.8
(3)
P 		545.6
(1.8)
P 		555.1
(1.9)
P 		124.3
(-3)
P 		526
avr 737.6
(3) 		473.3
(0.4) 		457.7
(0.2) 		131.7
(-3) 		606

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 517.1
(0.9)
P 		651.2
(3)
P 		286.5
(-2.6)
P 		307
(-2.3)
P 		526.1
(1.1)
P 		260.1
(-3)
P 		391
B 656.1
(1.2)
P 		787.6
(3)
P 		337.1
(-3)
P 		441.5
(-1.6)
P 		499.5
(-0.8)
P 		389.1
(-2.3)
P 		451
C 803.3
(3)
P 		649.5
(1.4)
P 		486.2
(-0.3)
P 		229.2
(-3)
P 		434.5
(-0.9)
P 		386.1
(-1.4)
P 		574
avr 658.8
(2.4) 		696.1
(3) 		369.9
(-2.3) 		325.9
(-3) 		486.7
(-0.4) 		345.1
(-2.7) 		370
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175840_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19962
Sequence Type Exemplar sequence
Representative Public ID 3212083 NCBI
Target Description g3212083 /REP_DB=GenBank Identifier /GB=AF068867.1 /PROTEIN_GB=AAC35506.1 /CHR=X /FEA=Mapped Transcript /DEF=putative actin-binding protein UNC-115
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077301 NCBI Caenorhabditis elegans UNCoordinated family member (unc-115) (unc-115) mRNA, complete cds. 11/11 A 
F09B9.2a ENSEMBL cdna:known chromosome:CEL140:X:10146821:10153062:1 gene:F09B9.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181227 2 1 NM_077301 175840_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10147173-10153069(+) 100.0 100.0
Public Domain and Genome References
Ensembl F09B9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90057 Hypothetical protein F09B9.2a [Caenorhabditis elegans] ref|NP_509702.3| UNCoordinated family member (unc-115) [Caenorhabditis elegans] 0.0
blast CAC70079 Hypothetical protein F09B9.2b [Caenorhabditis elegans] ref|NP_001024542.1| UNCoordinated family member (unc-115) [Caenorhabditis elegans] 0.0
blast AAC35506 putative actin-binding protein UNC-115 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003128 EMBL-EBI Villin headpiece 2.7E-23
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.3E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-15
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.1E-6
Sequence
Target Sequence 
>C. ELEGANS:175840_S_AT
taactttaatttgtcttctacgcggaatctcggtttttttctcttcttacagtttttctc
acaaaagattgcattttgcatgcgtgctttcttctatatgaattggtgttcaacgtttaa
ttgtcattacatttttatattattctaaattcccctcacattaataagctttttttaaat
tgcttagattattcatagcttttttaaacaaaaaatgctcatttttattttaaaatcaaa
gtgtataccgccagtaaaaaagctgtaatcaaaatgaataaaacctacagtagctagcta
acatgggtttatcatttcttttttattttacacatgttgcctcttctaggcaaatgcttg
tttcccatttgtctcaatttacctattatatccccgttatttgtctccaagtcatcccat
cttcaattttcaattgtaaaagaaaaaaaactgatcagaataggttattccccattattt
taattgttttttgttcctacttcacttctctcctatatgttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTTTAATTTGTCTTCTACGCGG 699 169 2598 Antisense
TCTTCTACGCGGAATCTCGGTTTTT 326 617 2611 Antisense
TTCTCTTCTTACAGTTTTTCTCACA 392 691 2636 Antisense
GCATTTTGCATGCGTGCTTTCTTCT 113 309 2668 Antisense
TATTATTCTAAATTCCCCTCACATT 340 663 2735 Antisense
AAATCAAAGTGTATACCGCCAGTAA 169 115 2830 Antisense
ATTTTACACATGTTGCCTCTTCTAG 272 15 2922 Antisense
AAATGCTTGTTTCCCATTTGTCTCA 46 121 2949 Antisense
GTCTCAATTTACCTATTATATCCCC 568 467 2968 Antisense
TATTATATCCCCGTTATTTGTCTCC 23 663 2981 Antisense
TTCACTTCTCTCCTATATGTTTTCA 432 687 3098 Antisense
Sequence Source GenBank