[Home] | [Total List]

[175839_s_at]

Description g2898159 /REP_DB=GenBank Identifier /GB=AF045612.1 /PROTEIN_GB=AAC38961.1 /CHR=1 /FEA=Mapped Transcript /DEF=inositol trisphosphate 3-kinase form 2
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 84      6grp_total > 48      4grp_total > 06      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1410
1 2 3 4 range
A 1205.1
(1.5)
P 		419.7
(-3)
P 		534.7
(-2.3)
P 		1469.4
(3)
P 		1050
B 1222.8
(0.6)
P 		446.6
(-3)
P 		552
(-2.5)
P 		1744.6
(3)
P 		1298
C 1085.3
(-0.3)
P 		473.1
(-3)
P 		550.8
(-2.7)
P 		1829.4
(3)
P 		1356
avr 1171.1
(0.5) 		446.5
(-3) 		545.8
(-2.5) 		1681.1
(3) 		1235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 605
1 2 3 4 5 6 range
A 826.8
(2.1)
P 		643.8
(-0.1)
P 		399.9
(-3)
P 		473.9
(-2.1)
P 		649.3
(-0)
P 		903.3
(3)
P 		503
B 697.4
(1.1)
P 		688.5
(1)
P 		298.5
(-3)
P 		585.4
(-0.1)
P 		637.4
(0.4)
P 		889.1
(3)
P 		591
C 702
(3)
P 		617.3
(1)
P 		446.8
(-3)
P 		503.6
(-1.7)
P 		560.4
(-0.3)
P 		656.8
(1.9)
P 		255
avr 742.1
(2) 		649.9
(0.7) 		381.7
(-3) 		521
(-1.1) 		615.7
(0.2) 		816.4
(3) 		435
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 348
1 2 3 4 range
A 438.8
(3)
P 		91.1
(-3)
P 		139.8
(-2.2)
P 		215.1
(-0.9)
P 		348
B 390
(3)
P 		110.3
(-3)
P 		127.9
(-2.6)
P 		371.8
(2.6)
P 		280
C 359.3
(3)
P 		136
(-3)
P 		192
(-1.5)
P 		308.5
(1.6)
P 		223
avr 396
(3) 		112.5
(-3) 		153.2
(-2.1) 		298.5
(0.9) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 152.4
(-0.2)
P 		229
(3)
P 		87.1
(-3)
P 		120.2
(-1.6)
P 		195.9
(1.6)
P 		219.9
(2.6)
P 		142
B 242.6
(0.9)
P 		229.2
(0.6)
P 		72.5
(-3)
P 		155.1
(-1.1)
P 		259
(1.3)
P 		331.5
(3)
P 		259
C 260.2
(3)
P 		188.4
(0.3)
P 		113.7
(-2.5)
P 		101.3
(-3)
P 		181.3
(0)
P 		219.9
(1.5)
P 		159
avr 218.4
(1.6) 		215.5
(1.5) 		91.1
(-3) 		125.5
(-1.8) 		212.1
(1.4) 		257.1
(3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175839_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19684
Sequence Type Exemplar sequence
Representative Public ID 2898159 NCBI
Target Description g2898159 /REP_DB=GenBank Identifier /GB=AF045612.1 /PROTEIN_GB=AAC38961.1 /CHR=1 /FEA=Mapped Transcript /DEF=inositol trisphosphate 3-kinase form 2
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025878(11), NM_001025877(11), NM_001025876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025878 NCBI Caenorhabditis elegans Let-23 Fertility effector/regulator family member (lfe-2) (lfe-2) mRNA, complete cds. 11/11 None
NM_001025877 NCBI Caenorhabditis elegans Let-23 Fertility effector/regulator family member (lfe-2) (lfe-2) mRNA, complete cds. 11/11 None
NM_001025876 NCBI Caenorhabditis elegans Let-23 Fertility effector/regulator family member (lfe-2) (lfe-2) mRNA, complete cds. 11/11 None
C46H11.4c ENSEMBL cdna:known chromosome:CEL140:I:5027155:5041157:1 gene:C46H11.4 11/11 A 
C46H11.4b ENSEMBL cdna:known chromosome:CEL140:I:5035818:5041157:1 gene:C46H11.4 11/11 A 
C46H11.4a ENSEMBL cdna:known chromosome:CEL140:I:5036977:5041157:1 gene:C46H11.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043160 2/11 Cross Hyb Matching Probes None
SNAP00000043103 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5035817-5041157(+) 96.82 100.0
Public Domain and Genome References
Ensembl C46H11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99884 Let-23 fertility effector/regulator protein 2, isoform c [Caenorhabditis elegans] ref|NP_001021049.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAC38962 inositol trisphosphate 3-kinase form 3 [Caenorhabditis elegans] 0.0
blast AAK71361 Let-23 fertility effector/regulator protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021048.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAC38961 inositol trisphosphate 3-kinase form 2 [Caenorhabditis elegans] 0.0
blast CAE65715 Hypothetical protein CBG10794 [Caenorhabditis briggsae] 0.0
blast AAK71360 Let-23 fertility effector/regulator protein 2, isoform a [Caenorhabditis elegans] ref|NP_001021047.1| Let-23 Fertility effector/regulator family member (lfe-2) [Caenorhabditis elegans] 0.0
blast AAC38960 inositol trisphosphate 3-kinase form 1 [Caenorhabditis elegans] 0.0
blast T25639 hypothetical protein C46H11.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175839_S_AT
ttctcgaagaactccccgagtacggagaacatcctgatgaccagttaatggtcacagagg
aagtgattgccagaatgaaaaatacgaaatcgtagaagcttctacctccttggattactg
tagatagatgaaagtgtgtgtctcttcatattccgccataataatttctgtgattcccca
ccgctcctccacaaaatcctcatccgtgtacaatttgctattattcaattttacaccccc
tccagccagtccttgtttttgttggttttttgaaaaagaaaatagattttttgaaaaaga
aaatagattttcactttttaatctatcgctttccccttctcttttcctttaccatggcat
aatccctagactttcttcttactttcagttgttttttttgttccattgtgtacgatccga
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCGAAGAACTCCCCGAGTACGG 548 691 1222 Antisense
GAGTACGGAGAACATCCTGATGACC 338 399 1239 Antisense
GCTTCTACCTCCTTGGATTACTGTA 7 301 1319 Antisense
AAAGTGTGTGTCTCTTCATATTCCG 525 121 1352 Antisense
AATCCTCATCCGTGTACAATTTGCT 684 167 1416 Antisense
TCCAGCCAGTCCTTGTTTTTGTTGG 444 589 1462 Antisense
TTCACTTTTTAATCTATCGCTTTCC 351 685 1531 Antisense
TTCTCTTTTCCTTTACCATGGCATA 104 693 1558 Antisense
ATGGCATAATCCCTAGACTTTCTTC 285 53 1575 Antisense
GACTTTCTTCTTACTTTCAGTTGTT 56 373 1590 Antisense
TTTGTTCCATTGTGTACGATCCGAG 46 655 1618 Antisense
Sequence Source GenBank