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[175832_s_at]

Description g8886067 /REP_DB=GenBank Identifier /GB=AF159143.1 /PROTEIN_GB=AAF80367.1 /CHR=1 /FEA=Mapped Transcript /DEF=RNA-directed RNA polymerase related EGO-1
Cluster 6grp_high1_10_10 > 96      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_total > 96      4grp_total > 39      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 116.3
(3)
P 		79.1
(-3)
P 		94.5
(-0.5)
P 		116.2
(3)
P 		37
B 93.9
(3)
P 		70.1
(-3)
P 		88.6
(1.7)
P 		86.4
(1.1)
P 		24
C 96.1
(3)
P 		63.8
(-1.4)
P 		62.1
(-1.6)
P 		51.8
(-3)
P 		44
avr 102.1
(3) 		71
(-3) 		81.7
(-0.9) 		84.8
(-0.3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 42.7
(-3)
A 		73.1
(-2.3)
P 		85.8
(-1.9)
P 		109.6
(-1.4)
P 		277.4
(2.8)
P 		286.9
(3)
P 		244
B 57.2
(-2.9)
P 		52.7
(-3)
P 		81.1
(-2.5)
P 		180.2
(-0.8)
P 		150.1
(-1.3)
P 		392.7
(3)
P 		340
C 39
(-3)
P 		53.8
(-2.7)
P 		78.8
(-2.2)
P 		177.1
(-0.2)
P 		179.5
(-0.1)
P 		333.5
(3)
P 		295
avr 46.3
(-3) 		59.9
(-2.7) 		81.9
(-2.3) 		155.6
(-0.7) 		202.3
(0.2) 		337.7
(3) 		291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 42.4
(3)
P 		17.2
(-3)
P 		24.7
(-1.2)
P 		17
(-3)
P 		25
B 29.9
(3)
P 		17.3
(-3)
P 		20.5
(-1.5)
P 		18.4
(-2.5)
P 		13
C 31.8
(3)
P 		18.3
(-0.5)
P 		21.6
(0.4)
P 		8.7
(-3)
P 		23
avr 34.7
(3) 		17.6
(-2.1) 		22.3
(-0.7) 		14.7
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 7.9
(-3)
A 		26
(-1.6)
P 		18.7
(-2.1)
P 		27.8
(-1.4)
P 		83.7
(3)
P 		69.8
(1.9)
P 		76
B 19.9
(-2.9)
P 		17.5
(-3)
P 		19.7
(-2.9)
P 		47.7
(-1.6)
P 		61
(-1)
P 		146.4
(3)
P 		129
C 14.4
(-3)
P 		16.4
(-2.9)
P 		20.1
(-2.6)
P 		35.6
(-1.7)
P 		58.1
(-0.3)
P 		111.6
(3)
P 		97
avr 14.1
(-3) 		20
(-2.6) 		19.5
(-2.7) 		37
(-1.6) 		67.6
(0.4) 		109.3
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175832_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19644
Sequence Type Exemplar sequence
Representative Public ID 8886067 NCBI
Target Description g8886067 /REP_DB=GenBank Identifier /GB=AF159143.1 /PROTEIN_GB=AAF80367.1 /CHR=1 /FEA=Mapped Transcript /DEF=RNA-directed RNA polymerase related EGO-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059731 NCBI Caenorhabditis elegans Enhancer of Glp-One (glp-1) family member (ego-1) (ego-1) mRNA, complete cds. 11/11 None
F26A3.3 ENSEMBL cdna:known chromosome:CEL140:I:7658549:7664463:-1 gene:F26A3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002469 3/11 Cross Hyb Matching Probes None
GENEFINDER00000002481 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7658479-7664394(-) 98.08 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ego-1
Ensembl F26A3.3
Entrez Gene 172524 Entrez gene
SwissProt Q93593 EMBL-EBI
WormBase CE27140 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01701 Hypothetical protein F26A3.3 [Caenorhabditis elegans] ref|NP_492132.1| Enhancer of Glp-One (glp-1) family member (ego-1) [Caenorhabditis elegans] gb|AAF80367.1| RNA-directed RNA polymerase related EGO-1 [Caenorhabditis elegans] 0.0
blast CAE57375 Hypothetical protein CBG00321 [Caenorhabditis briggsae] 0.0
blast CAC42290 Hypothetical protein F26A3.8 [Caenorhabditis elegans] ref|NP_492131.1| RNA-dependent RNA polymerase Family family member (rrf-1) [Caenorhabditis elegans] gb|AAF80368.1| RRF-1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007855 EMBL-EBI RNA dependent RNA polymerase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175832_S_AT
acgtacgtaacgggacaagatgtgtctacacagatggctcgattgtgctatgaaaagatt
gtcagaggacacatcaacatctagaatgtttctcttattcgtttttagcagtgttttcag
agattttaaatgtttaatatggttttcattttaaattttatttttctgttttttttttgc
atgttttaattggcatgcttatttctgtttctttttctcattatattttcctgttgtttc
ttttgctgattgattgaaatggataggtttctccttcttttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTACGTAACGGGACAAGATGTGT 222 89 4892 Antisense
ATGTGTCTACACAGATGGCTCGATT 557 49 4911 Antisense
GATGGCTCGATTGTGCTATGAAAAG 18 407 4924 Antisense
GTCAGAGGACACATCAACATCTAGA 659 465 4952 Antisense
ATGTTTCTCTTATTCGTTTTTAGCA 501 47 4977 Antisense
ATTCGTTTTTAGCAGTGTTTTCAGA 527 7 4988 Antisense
ATTGGCATGCTTATTTCTGTTTCTT 657 3 5080 Antisense
ATTTCTGTTTCTTTTTCTCATTATA 396 17 5092 Antisense
TTTTCTCATTATATTTTCCTGTTGT 93 677 5104 Antisense
TTTCCTGTTGTTTCTTTTGCTGATT 77 671 5118 Antisense
TGGATAGGTTTCTCCTTCTTTTCAT 357 547 5151 Antisense
Sequence Source GenBank