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[175831_s_at]

Description g1263171 /REP_DB=GenBank Identifier /GB=U13075.1 /PROTEIN_GB=AAA96983.1 /CHR=1 /FEA=Mapped Transcript /DEF=steroid hormone receptor family member CHR3
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 50      6grp_total > 08      4grp_total > 58      6grp_cgc > 10      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 256.2
(-0.1)
P 		379.4
(2.5)
P 		403.9
(3)
P 		114.8
(-3)
P 		289
B 178.5
(-0.7)
P 		345.3
(2.3)
P 		384.8
(3)
P 		48.6
(-3)
P 		336
C 138.2
(-1.9)
P 		359.3
(3)
P 		341.7
(2.6)
P 		89.7
(-3)
P 		270
avr 191
(-0.8) 		361.3
(2.7) 		376.8
(3) 		84.4
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 690
1 2 3 4 5 6 range
A 943
(3)
P 		282.5
(-3)
P 		480.7
(-1.2)
P 		345.9
(-2.4)
P 		426.2
(-1.7)
P 		306.7
(-2.8)
P 		661
B 814.3
(3)
P 		546
(-0.8)
P 		397.2
(-2.9)
P 		678.8
(1.1)
P 		391.4
(-3)
P 		392.8
(-3)
P 		423
C 488.3
(2.1)
P 		461.5
(1.5)
P 		499.1
(2.3)
P 		531.6
(3)
P 		324.9
(-1.5)
P 		253.4
(-3)
P 		278
avr 748.5
(3) 		430
(-1.4) 		459
(-1) 		518.8
(-0.2) 		380.8
(-2.1) 		317.6
(-3) 		431
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 93.3
(2.2)
P 		82.4
(1.4)
P 		105.6
(3)
P 		16.8
(-3)
P 		89
B 56.9
(0.5)
P 		85.3
(2.7)
P 		89.2
(3)
P 		10.4
(-3)
P 		79
C 45.7
(-1.2)
P 		103.3
(2.1)
P 		119.1
(3)
P 		15.1
(-3)
P 		104
avr 65.3
(0.4) 		90.3
(2.1) 		104.6
(3) 		14.1
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 173.8
(3)
P 		100.5
(-1.4)
P 		104.7
(-1.2)
P 		87.7
(-2.2)
P 		128.6
(0.3)
P 		74.7
(-3)
P 		99
B 283.4
(3)
P 		181.7
(-0.3)
P 		96.5
(-3)
P 		179.8
(-0.3)
P 		159
(-1)
P 		146.5
(-1.4)
P 		187
C 181
(3)
P 		140.8
(0.5)
P 		127
(-0.4)
P 		106.9
(-1.6)
P 		105.1
(-1.7)
P 		84.8
(-3)
P 		96
avr 212.7
(3) 		141
(-0.9) 		109.4
(-2.6) 		124.8
(-1.8) 		130.9
(-1.4) 		102
(-3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175831_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19650
Sequence Type Exemplar sequence
Representative Public ID 1263171 NCBI
Target Description g1263171 /REP_DB=GenBank Identifier /GB=U13075.1 /PROTEIN_GB=AAA96983.1 /CHR=1 /FEA=Mapped Transcript /DEF=steroid hormone receptor family member CHR3
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025804(11), NM_001025805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025804 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-23) (nhr-23) mRNA, complete cds. 11/11 None
NM_001025805 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-23) (nhr-23) mRNA, complete cds. 11/11 None
C01H6.5a ENSEMBL cdna:known chromosome:CEL140:I:7224915:7229937:1 gene:C01H6.5 11/11 A 
C01H6.5b.2 ENSEMBL cdna:known chromosome:CEL140:I:7226915:7229958:1 gene:C01H6.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
C01H6.5b.3 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172460 3 2 NM_001025804 175831_s_at (11)
NM_001025805 175831_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7226845-7229889(+) 99.15 100.0
Public Domain and Genome References
Ensembl C01H6.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95782 Hypothetical protein C01H6.5a [Caenorhabditis elegans] ref|NP_001020975.1| Nuclear Hormone Receptor family member (nhr-23) [Caenorhabditis elegans] gb|AAK17974.1| nuclear receptor NHR-23 [Caenorhabditis elegans] sp|P41828|NHR23_CAEEL Nuclear hormone receptor family member nhr-23 (Steroid hormone receptor family member chr-3) 0.0
blast T18848 hypothetical protein C01H6.5 - Caenorhabditis elegans 0.0
blast AAK17973 nuclear receptor NHR-23 [Caenorhabditis elegans] 0.0
blast CAD30427 Hypothetical protein C01H6.5b [Caenorhabditis elegans] ref|NP_001020976.1| Nuclear Hormone Receptor family member (nhr-23) [Caenorhabditis elegans] gb|AAA96057.1| CHR3 gene product 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.3E-22
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.3E-54
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.3E-22
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.3E-54
Sequence
Target Sequence 
>C. ELEGANS:175831_S_AT
actcggatcttctttacttacttgttctaatttattaatgacttttgtcacccccccccc
ccccctcgtgtaccatgtacaatcatgttgcgttccatgttttcttgcatttcatgttca
gtaaaatttctgaaaccataccaatctctctcttgtcttatcatttctcttcaggtattg
atgcctctccccatcccatcccatactcttttcgtgatcaacacgggtacaaaaccacaa
atttccatttatctggatttctaggcgcactaatttttattttattaaatatctccccat
ttattgccttttaaaactcgtatcattccagtgtctgcgctttaattacgccttcttacc
catttgatccaaccattttctcgtttatggtgtagtggtcgcttgagtgtttccattgtt
tcatgtaacatcctaaatatgtttcattgtcatcaatgcattcagctccatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCGGATCTTCTTTACTTACTTGT 288 99 1998 Antisense
TGTTGCGTTCCATGTTTTCTTGCAT 145 563 2083 Antisense
TTCTGAAACCATACCAATCTCTCTC 664 693 2125 Antisense
TCTCTTCAGGTATTGATGCCTCTCC 533 609 2163 Antisense
ATCCCATACTCTTTTCGTGATCAAC 677 37 2195 Antisense
TTTATCTGGATTTCTAGGCGCACTA 254 673 2245 Antisense
AAACTCGTATCATTCCAGTGTCTGC 6 129 2311 Antisense
GTGTCTGCGCTTTAATTACGCCTTC 409 487 2328 Antisense
TGATCCAACCATTTTCTCGTTTATG 140 567 2362 Antisense
GTGGTCGCTTGAGTGTTTCCATTGT 360 489 2392 Antisense
GTCATCAATGCATTCAGCTCCATAC 51 467 2446 Antisense
Sequence Source GenBank