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[175825_s_at]

Description g3452402 /REP_DB=GenBank Identifier /GB=AF083648.1 /PROTEIN_GB=AAC32859.1 /CHR=X /FEA=Mapped Transcript /DEF=putative potassium channel subunit n2P17m2-3
Cluster 6grp_total > 06      4grp_total > 37      6grp_cgc > 22      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 65.9
(3)
P 		53
(1.1)
A 		25.2
(-3)
A 		45.5
(-0)
A 		41
B 68.9
(3)
P 		47.1
(-0.4)
A 		33.1
(-2.5)
M 		29.9
(-3)
P 		39
C 79.7
(2.2)
P 		60.4
(-0.3)
A 		39.8
(-3)
A 		85.9
(3)
P 		46
avr 71.5
(3) 		53.5
(0.2) 		32.7
(-3) 		53.8
(0.3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 72
(3)
A 		67.9
(2)
P 		71.6
(2.9)
P 		49.7
(-2.7)
A 		48.5
(-3)
P 		54.5
(-1.5)
A 		24
B 44.1
(-2.3)
P 		61.8
(3)
P 		44.5
(-2.1)
A 		51.1
(-0.2)
M 		49.8
(-0.6)
P 		41.6
(-3)
M 		20
C 88.8
(3)
P 		54.2
(-0.9)
P 		47.7
(-1.6)
P 		35.7
(-3)
A 		69.1
(0.8)
P 		40
(-2.5)
A 		53
avr 68.3
(3) 		61.3
(1.2) 		54.6
(-0.6) 		45.5
(-3) 		55.8
(-0.3) 		45.4
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 24
(3)
P 		11.5
(-1.3)
A 		6.6
(-3)
A 		6.7
(-3)
A 		17
B 22
(3)
P 		11.6
(-1)
A 		7.7
(-2.5)
M 		6.4
(-3)
P 		16
C 26.4
(3)
P 		17.4
(-1.3)
A 		13.9
(-3)
A 		14.5
(-2.7)
P 		13
avr 24.1
(3) 		13.5
(-1.3) 		9.4
(-2.9) 		9.2
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.3
(-2.6)
A 		24.2
(3)
P 		15.6
(-1.4)
P 		12.6
(-3)
A 		14.6
(-2)
P 		13.3
(-2.6)
A 		12
B 15.4
(-0.2)
P 		20.6
(3)
P 		10.8
(-3)
A 		13.5
(-1.3)
M 		20.2
(2.8)
P 		15.5
(-0.1)
M 		10
C 32.9
(3)
P 		16.5
(-0.8)
P 		12.2
(-1.8)
P 		7.2
(-3)
A 		22.4
(0.5)
P 		13.4
(-1.6)
A 		26
avr 20.5
(3) 		20.4
(2.9) 		12.9
(-1.9) 		11.1
(-3) 		19.1
(2.1) 		14.1
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175825_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19960
Sequence Type Exemplar sequence
Representative Public ID 3452402 NCBI
Target Description g3452402 /REP_DB=GenBank Identifier /GB=AF083648.1 /PROTEIN_GB=AAC32859.1 /CHR=X /FEA=Mapped Transcript /DEF=putative potassium channel subunit n2P17m2-3
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029294(11), NM_001029296(11), NM_001029292(11), NM_001029293(11), NM_001029291(11), NM_001029295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029294 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
NM_001029296 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
NM_001029292 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
NM_001029293 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
NM_001029291 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
NM_001029295 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
SNAP00000016789 ENSEMBL cdna:SNAP chromosome:CEL140:X:7600307:7603348:-1 10/11 None
C44E12.3d ENSEMBL cdna:known chromosome:CEL140:X:7599778:7606338:-1 gene:C44E12.3 11/11 A 
C44E12.3e ENSEMBL cdna:known chromosome:CEL140:X:7599810:7606338:-1 gene:C44E12.3 11/11 A 
C44E12.3f ENSEMBL cdna:known chromosome:CEL140:X:7600307:7607948:-1 gene:C44E12.3 11/11 None
C44E12.3c ENSEMBL cdna:known chromosome:CEL140:X:7600307:7606338:-1 gene:C44E12.3 11/11 A 
C44E12.3a ENSEMBL cdna:known chromosome:CEL140:X:7600307:7604350:-1 gene:C44E12.3 11/11 A 
C44E12.3b ENSEMBL cdna:known chromosome:CEL140:X:7600307:7607948:-1 gene:C44E12.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016791 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7600853-7606337(-) 100.0 100.0
Public Domain and Genome References
Ensembl C44E12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51532 Twik family of potassium channels protein 17, isoform d [Caenorhabditis elegans] ref|NP_001024465.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] gb|AAC32862.1| putative potassium channel subunit n2P17m2-1 [Caenorhabditis elegans] 0.0
blast AAM51531 Twik family of potassium channels protein 17, isoform c [Caenorhabditis elegans] ref|NP_001024464.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] gb|AAC32858.1| putative potassium channel subunit n2P17m2-2 [Caenorhabditis elegans] 0.0
blast AAP31441 Twik family of potassium channels protein 17, isoform e [Caenorhabditis elegans] ref|NP_001024466.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] gb|AAC32859.1| putative potassium channel subunit n2P17m2-3 [Caenorhabditis elegans] 0.0
blast AAW30673 Twik family of potassium channels protein 17, isoform f [Caenorhabditis elegans] ref|NP_001024467.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] gb|AAC32854.1| putative potassium channel subunit n2P17m1-2 [Caenorhabditis elegans] 0.0
blast AAM51530 Twik family of potassium channels protein 17, isoform b [Caenorhabditis elegans] ref|NP_001024463.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] gb|AAC32855.1| putative potassium channel subunit n2P17m1-1 [Caenorhabditis elegans] 0.0
blast AAM51529 Twik family of potassium channels protein 17, isoform a [Caenorhabditis elegans] ref|NP_001024462.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024465.1 6 142-164,243-265,275-297,365-387,392-414,421-440
NP_001024467.1 6 78-100,179-201,211-233,301-323,328-350,357-376
NP_001024463.1 6 78-100,179-201,211-233,301-323,328-350,357-376
NP_001024464.1 6 142-164,243-265,275-297,365-387,392-414,421-440
NP_001024462.1 6 85-107,186-208,218-240,308-330,335-357,364-383
NP_001024466.1 6 142-164,243-265,275-297,365-387,392-414,421-440
C44E12.3d 6 142-164,243-265,275-297,365-387,392-414,421-440
C44E12.3e 6 142-164,243-265,275-297,365-387,392-414,421-440
C44E12.3f 6 78-100,179-201,211-233,301-323,328-350,357-376
C44E12.3c 6 142-164,243-265,275-297,365-387,392-414,421-440
C44E12.3a 6 85-107,186-208,218-240,308-330,335-357,364-383
C44E12.3b 6 78-100,179-201,211-233,301-323,328-350,357-376
SNAP00000016789 5 88-110,125-147,176-198,203-225,232-251
Sequence
Target Sequence 
>C. ELEGANS:175825_S_AT
cgaaatgcgagtagtctggacgacgaagaatgtgaagatgaggaagatcgattacagttg
cccattgctagttatttcacgctaattattggatactgttgcgttggaagtttattattc
aatacgtttgaaaaaggacccgtatggtcattcattcacggcgtcttcttctcattcaat
accatcacaacaattggattgggaaatattcgagttcagcagcactactaccttgcactc
gcggtatcttatgtaattatcggtcttgctgtcatcactgcatcactggatctctgttcc
tctacactgaaacgaacatttaccaaacttcactactttggaagaaagattcgtggtgct
cgacgtggttttgcaaatatgagcgatgacatccgagaagcaatgcgaataattgctgcg
ttgaaaaagacaaggccatcgaaagatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAATGCGAGTAGTCTGGACGACG 100 251 1045 Antisense
GGAAGATCGATTACAGTTGCCCATT 576 531 1086 Antisense
GTTGCCCATTGCTAGTTATTTCACG 584 439 1101 Antisense
ATTTCACGCTAATTATTGGATACTG 624 13 1118 Antisense
GGATACTGTTGCGTTGGAAGTTTAT 690 507 1135 Antisense
CGTATGGTCATTCATTCACGGCGTC 276 245 1185 Antisense
TCTTCTTCTCATTCAATACCATCAC 393 617 1208 Antisense
ATTCGAGTTCAGCAGCACTACTACC 236 7 1252 Antisense
TGGTGCTCGACGTGGTTTTGCAAAT 269 543 1398 Antisense
GAGCGATGACATCCGAGAAGCAATG 350 387 1425 Antisense
AAAAGACAAGGCCATCGAAAGATCG 576 131 1469 Antisense
Sequence Source GenBank