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[175824_s_at]

Description g5834389 /REP_DB=GenBank Identifier /GB=AF180735.1 /PROTEIN_GB=AAD53949.1 /CHR=4 /FEA=Mapped Transcript /DEF=calcium-calmodulin dependent protein kinase II
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 05      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 11      6grp_total > 06      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 971
1 2 3 4 range
A 2023.9
(3)
P 		1265.7
(-2)
P 		1110.5
(-3)
P 		1408.8
(-1)
P 		913
B 1950.7
(3)
P 		1136
(-2.4)
P 		1052.8
(-3)
P 		1214.6
(-1.9)
P 		898
C 1683.6
(3)
P 		1312.3
(-0.7)
P 		1165.5
(-2.2)
P 		1088.8
(-3)
P 		595
avr 1886.1
(3) 		1238
(-2) 		1109.6
(-3) 		1237.4
(-2) 		777

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1419
1 2 3 4 5 6 range
A 2390
(3)
P 		1767.6
(-0)
P 		1162.7
(-3)
P 		1476.9
(-1.5)
P 		1529.6
(-1.2)
P 		1283.1
(-2.4)
P 		1227
B 2141.7
(3)
P 		1552.6
(-0.4)
P 		1454.8
(-1)
P 		1500.9
(-0.7)
P 		1307.9
(-1.8)
P 		1109.8
(-3)
P 		1032
C 2347.1
(3)
P 		1849.3
(0.8)
P 		1821.3
(0.7)
P 		1083.7
(-2.5)
P 		1553.8
(-0.5)
P 		971.2
(-3)
P 		1376
avr 2292.9
(3) 		1723.2
(0.1) 		1479.6
(-1.2) 		1353.8
(-1.8) 		1463.8
(-1.2) 		1121.4
(-3) 		1172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 736.9
(3)
P 		274.7
(-2.2)
P 		290.3
(-2)
P 		206.2
(-3)
P 		531
B 622.1
(3)
P 		280.6
(-2.4)
P 		244
(-3)
P 		258.8
(-2.8)
P 		378
C 557.3
(3)
P 		377.3
(0.1)
P 		406.2
(0.6)
P 		183.6
(-3)
P 		374
avr 638.8
(3) 		310.9
(-1.7) 		313.5
(-1.6) 		216.2
(-3) 		423

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 652
1 2 3 4 5 6 range
A 440.6
(-0)
P 		628.7
(3)
P 		253.2
(-3)
P 		374.6
(-1.1)
P 		461.6
(0.3)
P 		312.4
(-2.1)
P 		376
B 745.2
(3)
P 		516.8
(-0.5)
P 		353.3
(-3)
P 		397.5
(-2.3)
P 		531.4
(-0.3)
P 		413.8
(-2.1)
P 		392
C 870
(3)
P 		564.3
(0.2)
P 		463.6
(-0.7)
P 		217.9
(-3)
P 		502.8
(-0.4)
P 		325.1
(-2)
P 		652
avr 685.3
(3) 		569.9
(1.1) 		356.7
(-2.5) 		330
(-3) 		498.6
(-0.2) 		350.4
(-2.7) 		355
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175824_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19850
Sequence Type Exemplar sequence
Representative Public ID 5834389 NCBI
Target Description g5834389 /REP_DB=GenBank Identifier /GB=AF180735.1 /PROTEIN_GB=AAD53949.1 /CHR=4 /FEA=Mapped Transcript /DEF=calcium-calmodulin dependent protein kinase II
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028125(11), NM_001028131(11), NM_001028132(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028125 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028131 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028132 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
K11E8.1d ENSEMBL cdna:known chromosome:CEL140:IV:10324241:10340517:-1 gene:K11E8.1 11/11 A 
K11E8.1k ENSEMBL cdna:known chromosome:CEL140:IV:10324241:10340140:-1 gene:K11E8.1 11/11 A 
K11E8.1l ENSEMBL cdna:known chromosome:CEL140:IV:10324241:10340528:-1 gene:K11E8.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177921 12 3 NM_001028122 172058_x_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028123 187759_s_at (11), 193459_s_at (11)
NM_001028124 172058_x_at (9), 175820_s_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028125 172058_x_at (11), 175821_s_at (11), 175824_s_at (11), 187759_s_at (11), 193459_s_at (11)
NM_001028126 172058_x_at (11), 175820_s_at (11), 175821_s_at (11), 193459_s_at (11)
NM_001028127 172058_x_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028128 172058_x_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028129 172058_x_at (11), 175820_s_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028130 172058_x_at (11), 173423_at (11), 193459_s_at (11)
NM_001028131 175821_s_at (11), 175824_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028132 172058_x_at (9), 175821_s_at (11), 175824_s_at (11), 193459_s_at (11)
NM_001028133 175821_s_at (11), 193463_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10324298-10340523(-) 100.0 100.0
Public Domain and Genome References
Ensembl K11E8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42326 Hypothetical protein K11E8.1d [Caenorhabditis elegans] emb|CAC42364.1| Hypothetical protein K11E8.1d [Caenorhabditis elegans] ref|NP_001023296.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] gb|AAD53949.1| calcium/calmodulin dependent protein kinase II [Caenorhabditis elegans] 0.0
blast CAC42323 Hypothetical protein K11E8.1g [Caenorhabditis elegans] emb|CAC42361.1| Hypothetical protein K11E8.1g [Caenorhabditis elegans] ref|NP_001023299.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] gb|AAF63320.1| calcium/calmodulin-dependent protein kinase II isoform B [Caenorhabditis elegans] 0.0
blast CAC42327 Hypothetical protein K11E8.1f [Caenorhabditis elegans] emb|CAC42365.1| Hypothetical protein K11E8.1f [Caenorhabditis elegans] ref|NP_001023298.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] gb|AAF63323.1| calcium/calmodulin-dependent protein kinase II isoform E [Caenorhabditis elegans] 0.0
blast CAC42328 Hypothetical protein K11E8.1k [Caenorhabditis elegans] emb|CAC42366.1| Hypothetical protein K11E8.1k [Caenorhabditis elegans] ref|NP_001023302.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] gb|AAF63324.1| calcium/calmodulin-dependent protein kinase II isoform F [Caenorhabditis elegans] 1.0E-175
blast CAC42329 Hypothetical protein K11E8.1l [Caenorhabditis elegans] emb|CAC42367.1| Hypothetical protein K11E8.1l [Caenorhabditis elegans] ref|NP_001023303.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] gb|AAF63325.1| calcium/calmodulin-dependent protein kinase II isoform G [Caenorhabditis elegans] 1.0E-175
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 7.0E-66
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 6.0E-66
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-66
hanks 2.1.5 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DmCamKII 1.0E-137
hanks 2.1.5 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DmCamKII 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.3E-97
Sequence
Target Sequence 
>C. ELEGANS:175824_S_AT
ctctctaggcaatattttccccgatattttcttttgagccatttcaattcagttttgatg
accaaaaaaaacaattatgtttcgtttttcatagcattatctgcttttttcttgttctct
ttcttgtcccattctctcagatatatggtttttgggtgacccatcttttttctcctttta
tagtctcacaaaaaagtgtcgtcggtttttttttcaattttttatttcaaaaaaagcttc
tcttgttttctctcccctgttctttcctcgtttactctgaacaaatctgaatagcatttt
cgattaaaacaatatatctctctttttctaatttatttgtgaatcacccctcttccctcc
aataaattaaccttccccattcacttccccttcttaaaatctgttagtttcccccaccat
catttttatctatgatatttccatttgcacaaggcccacaatttgtattttattggaacg
cccccaccttccctcccgtctcgagatcactcgttttctattttttttttgctctcaact
tatacaacctctcgttgttttgtcaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCTAGGCAATATTTTCCCCGAT 167 229 1736 Antisense
AGCATTATCTGCTTTTTTCTTGTTC 643 77 1828 Antisense
TCTTGTCCCATTCTCTCAGATATAT 373 617 1857 Antisense
TTTTTTCTCCTTTTATAGTCTCACA 642 675 1901 Antisense
TTCTTTCCTCGTTTACTCTGAACAA 445 691 1995 Antisense
AACAATATATCTCTCTTTTTCTAAT 40 135 2043 Antisense
TTTATTTGTGAATCACCCCTCTTCC 108 675 2067 Antisense
TATTTCCATTTGCACAAGGCCCACA 608 659 2171 Antisense
TCCCGTCTCGAGATCACTCGTTTTC 235 597 2229 Antisense
TTGCTCTCAACTTATACAACCTCTC 457 703 2264 Antisense
CAACCTCTCGTTGTTTTGTCAATTC 210 187 2280 Antisense
Sequence Source GenBank