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[175821_s_at]

Description g7533011 /REP_DB=GenBank Identifier /GB=AF233267.1 /PROTEIN_GB=AAF63325.1 /CHR=4 /FEA=Mapped Transcript /DEF=calcium-calmodulin-dependent protein kinase IIisoform G
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 58      4grp_high_8_8 > 32      6grp_highest_nonorm > 02      6grp_total > 15      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1226
1 2 3 4 range
A 2626.5
(3)
P 		1615.7
(-1.9)
P 		1400.3
(-3)
P 		1638.1
(-1.8)
P 		1226
B 2476.5
(3)
P 		1669.6
(-3)
P 		1711.3
(-2.7)
P 		1671.6
(-3)
P 		807
C 2512.8
(3)
P 		1830.9
(-1.3)
P 		1648.6
(-2.4)
P 		1560.5
(-3)
P 		952
avr 2538.6
(3) 		1705.4
(-2.3) 		1586.7
(-3) 		1623.4
(-2.8) 		952

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2220
1 2 3 4 5 6 range
A 2634.5
(2.4)
P 		2281.5
(0.8)
P 		2758.1
(3)
P 		1530.2
(-2.5)
P 		2289.4
(0.9)
P 		1428.2
(-3)
P 		1330
B 3255.5
(2.8)
P 		3304
(3)
P 		2728.7
(0.9)
P 		2208.2
(-0.9)
P 		1896.1
(-2)
P 		1623.5
(-3)
P 		1681
C 3587.3
(3)
P 		3459.5
(2.7)
P 		1807.7
(-1.8)
P 		2174.3
(-0.8)
P 		2016.8
(-1.2)
P 		1367.4
(-3)
P 		2220
avr 3159.1
(3) 		3015
(2.5) 		2431.5
(0.4) 		1970.9
(-1.2) 		2067.4
(-0.9) 		1473
(-3) 		1686
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 717
1 2 3 4 range
A 956.3
(3)
P 		350.7
(-2.1)
P 		366.1
(-1.9)
P 		239.8
(-3)
P 		717
B 789.7
(3)
P 		412.4
(-2.2)
P 		396.5
(-2.4)
P 		356.2
(-3)
P 		434
C 831.8
(3)
P 		526.4
(-0.2)
P 		574.6
(0.3)
P 		263.1
(-3)
P 		569
avr 859.3
(3) 		429.8
(-1.5) 		445.7
(-1.3) 		286.4
(-3) 		573

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 982
1 2 3 4 5 6 range
A 485.7
(-1.2)
P 		811.4
(3)
P 		600.7
(0.3)
P 		388.1
(-2.5)
P 		690.9
(1.4)
P 		347.7
(-3)
P 		464
B 1132.8
(3)
P 		1099.8
(2.6)
P 		662.6
(-2.1)
P 		584.9
(-3)
P 		770.4
(-1)
P 		605.4
(-2.8)
P 		548
C 1329.6
(3)
P 		1055.6
(1.2)
P 		460.1
(-2.8)
P 		437.3
(-3)
P 		652.6
(-1.6)
P 		457.7
(-2.9)
P 		892
avr 982.7
(2.9) 		988.9
(3) 		574.5
(-1.8) 		470.1
(-3) 		704.6
(-0.3) 		470.3
(-3) 		519
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175821_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19871
Sequence Type Exemplar sequence
Representative Public ID 7533011 NCBI
Target Description g7533011 /REP_DB=GenBank Identifier /GB=AF233267.1 /PROTEIN_GB=AAF63325.1 /CHR=4 /FEA=Mapped Transcript /DEF=calcium-calmodulin-dependent protein kinase IIisoform G
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028125(11), NM_001028131(11), NM_001028132(11), NM_001028122(11), NM_001028128(11), NM_001028127(11), NM_001028124(11), NM_001028126(11), NM_001028129(11), NM_001028133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028125 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028131 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028132 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028122 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028128 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028127 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028124 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028126 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028129 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028133 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
GENEFINDER00000001605 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10324967:10326695:-1 11/11 None
K11E8.1d ENSEMBL cdna:known chromosome:CEL140:IV:10324241:10340517:-1 gene:K11E8.1 11/11 A 
K11E8.1k ENSEMBL cdna:known chromosome:CEL140:IV:10324241:10340140:-1 gene:K11E8.1 11/11 A 
K11E8.1l ENSEMBL cdna:known chromosome:CEL140:IV:10324241:10340528:-1 gene:K11E8.1 11/11 A 
K11E8.1e ENSEMBL cdna:known chromosome:CEL140:IV:10324967:10340140:-1 gene:K11E8.1 11/11 A 
K11E8.1h ENSEMBL cdna:known chromosome:CEL140:IV:10324967:10340140:-1 gene:K11E8.1 11/11 A 
K11E8.1c ENSEMBL cdna:known chromosome:CEL140:IV:10324967:10340140:-1 gene:K11E8.1 11/11 A 
K11E8.1a ENSEMBL cdna:known chromosome:CEL140:IV:10324967:10340140:-1 gene:K11E8.1 11/11 A 
K11E8.1f ENSEMBL cdna:known chromosome:CEL140:IV:10324967:10340140:-1 gene:K11E8.1 11/11 A 
K11E8.1m ENSEMBL cdna:known chromosome:CEL140:IV:10324967:10331114:-1 gene:K11E8.1 11/11 A 
K11E8.1g ENSEMBL cdna:known chromosome:CEL140:IV:10324967:10340140:-1 gene:K11E8.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001601 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177921 12 10 NM_001028122 172058_x_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028123 187759_s_at (11), 193459_s_at (11)
NM_001028124 172058_x_at (9), 175820_s_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028125 172058_x_at (11), 175821_s_at (11), 175824_s_at (11), 187759_s_at (11), 193459_s_at (11)
NM_001028126 172058_x_at (11), 175820_s_at (11), 175821_s_at (11), 193459_s_at (11)
NM_001028127 172058_x_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028128 172058_x_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028129 172058_x_at (11), 175820_s_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028130 172058_x_at (11), 173423_at (11), 193459_s_at (11)
NM_001028131 175821_s_at (11), 175824_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028132 172058_x_at (9), 175821_s_at (11), 175824_s_at (11), 193459_s_at (11)
NM_001028133 175821_s_at (11), 193463_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10324972-10340146(-) 100.0 100.0
Public Domain and Genome References
Ensembl K11E8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42326 Hypothetical protein K11E8.1d [Caenorhabditis elegans] emb|CAC42364.1| Hypothetical protein K11E8.1d [Caenorhabditis elegans] ref|NP_001023296.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] gb|AAD53949.1| calcium/calmodulin dependent protein kinase II [Caenorhabditis elegans] 0.0
blast CAC42323 Hypothetical protein K11E8.1g [Caenorhabditis elegans] emb|CAC42361.1| Hypothetical protein K11E8.1g [Caenorhabditis elegans] ref|NP_001023299.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] gb|AAF63320.1| calcium/calmodulin-dependent protein kinase II isoform B [Caenorhabditis elegans] 0.0
blast CAC42327 Hypothetical protein K11E8.1f [Caenorhabditis elegans] emb|CAC42365.1| Hypothetical protein K11E8.1f [Caenorhabditis elegans] ref|NP_001023298.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] gb|AAF63323.1| calcium/calmodulin-dependent protein kinase II isoform E [Caenorhabditis elegans] 0.0
blast CAA94242 Hypothetical protein K11E8.1a [Caenorhabditis elegans] emb|CAC42358.1| Hypothetical protein K11E8.1a [Caenorhabditis elegans] ref|NP_001023293.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 7.0E-66
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 6.0E-66
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-66
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 7.0E-67
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 6.0E-67
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-67
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 6.0E-68
hanks 2.1.5 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DmCamKII 1.0E-137
hanks 2.1.5 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DmCamKII 1.0E-138
hanks 2.1.5 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DmCamKII 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.3E-97
Sequence
Target Sequence 
>C. ELEGANS:175821_S_AT
acaggatattgtacgggtgactcagacgttgttggatgcaatttcatgcaaggatttcga
aacatacacaagattatgcgacacttcgatgacatgctttgagccggaagcacttggtaa
ccttatcgaaggcatcgaatttcacagattttactttgatggaaatcggaaaaaccaagt
gcacacaacaatgctcaatccgaatgtgcatatcattggagaagatgccgcgtgtgttgc
ttacgtgaaattgacacagttcttggatagaaacggagaagctcatacccgtcagtcaca
agaatcacgtgtgtggtcaaagaaacaaggccgttgggtgtgtgttcatgtacatcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGGATATTGTACGGGTGACTCAG 332 107 1013 Antisense
GGTGACTCAGACGTTGTTGGATGCA 230 501 1028 Antisense
GCGACACTTCGATGACATGCTTTGA 586 289 1090 Antisense
GAGCCGGAAGCACTTGGTAACCTTA 692 383 1113 Antisense
CAACAATGCTCAATCCGAATGTGCA 66 191 1198 Antisense
TGGAGAAGATGCCGCGTGTGTTGCT 485 549 1229 Antisense
TGCCGCGTGTGTTGCTTACGTGAAA 218 585 1238 Antisense
GAAACGGAGAAGCTCATACCCGTCA 575 355 1282 Antisense
CATACCCGTCAGTCACAAGAATCAC 437 213 1296 Antisense
AGAAACAAGGCCGTTGGGTGTGTGT 555 59 1333 Antisense
GGGTGTGTGTTCATGTACATCGATC 17 499 1348 Antisense
Sequence Source GenBank