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[175820_s_at]

Description g7533003 /REP_DB=GenBank Identifier /GB=AF233263.1 /PROTEIN_GB=AAF63321.1 /CHR=4 /FEA=Mapped Transcript /DEF=calcium-calmodulin-dependent protein kinase IIisoform C
Cluster 6grp_high1_10_10 > 04      4grp_high_8_8 > 25      6grp_total > 25      4grp_total > 38      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 253.6
(3)
P 		185.5
(0.1)
P 		111.5
(-3)
A 		214.8
(1.4)
P 		142
B 326.6
(3)
P 		176.9
(-1.6)
P 		129.3
(-3)
P 		173.8
(-1.6)
A 		197
C 310.3
(3)
P 		179.3
(-1.8)
M 		147.7
(-3)
P 		172.3
(-2.1)
P 		163
avr 296.8
(3) 		180.6
(-1.2) 		129.5
(-3) 		187
(-0.9) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 263.8
(3)
P 		242.9
(2.2)
P 		243.3
(2.2)
P 		104.9
(-3)
P 		174
(-0.4)
P 		122.9
(-2.3)
A 		159
B 236.2
(0.7)
P 		304.6
(3)
P 		253.6
(1.3)
P 		178.1
(-1.3)
P 		141.5
(-2.5)
P 		127.7
(-3)
P 		177
C 277.1
(1.9)
P 		309.8
(3)
P 		126.2
(-3)
P 		157
(-2)
P 		148.3
(-2.3)
P 		147.6
(-2.3)
P 		184
avr 259
(1.9) 		285.8
(3) 		207.7
(-0.1) 		146.7
(-2.5) 		154.6
(-2.1) 		132.7
(-3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 92.3
(3)
P 		40.3
(-1.9)
P 		29.1
(-3)
A 		31.4
(-2.8)
P 		63
B 104.2
(3)
P 		43.7
(-1.9)
P 		30
(-3)
P 		37
(-2.4)
A 		74
C 102.7
(3)
P 		51.5
(-1.2)
M 		51.5
(-1.2)
P 		29.1
(-3)
P 		74
avr 99.7
(3) 		45.2
(-1.9) 		36.9
(-2.6) 		32.5
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 48.6
(-0.8)
P 		86.4
(3)
P 		53
(-0.4)
P 		26.6
(-3)
P 		52.5
(-0.4)
P 		29.9
(-2.7)
A 		60
B 82.2
(0.9)
P 		101.4
(3)
P 		61.6
(-1.4)
P 		47.2
(-3)
P 		57.5
(-1.9)
P 		47.6
(-3)
P 		54
C 102.7
(3)
P 		94.5
(2.3)
P 		32.1
(-3)
P 		31.6
(-3)
P 		48
(-1.6)
P 		49.4
(-1.5)
P 		71
avr 77.8
(1.3) 		94.1
(3) 		48.9
(-1.6) 		35.1
(-3) 		52.7
(-1.2) 		42.3
(-2.3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175820_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19860
Sequence Type Exemplar sequence
Representative Public ID 7533003 NCBI
Target Description g7533003 /REP_DB=GenBank Identifier /GB=AF233263.1 /PROTEIN_GB=AAF63321.1 /CHR=4 /FEA=Mapped Transcript /DEF=calcium-calmodulin-dependent protein kinase IIisoform C
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028124(11), NM_001028126(11), NM_001028129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028124 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028126 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
NM_001028129 NCBI Caenorhabditis elegans UNCoordinated family member (unc-43) (unc-43) mRNA, complete cds. 11/11 None
SNAP00000001603 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10335892:10336215:-1 11/11 None
GENEFINDER00000001607 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10329057:10336215:-1 11/11 None
K11E8.1e ENSEMBL cdna:known chromosome:CEL140:IV:10324967:10340140:-1 gene:K11E8.1 11/11 A 
K11E8.1h ENSEMBL cdna:known chromosome:CEL140:IV:10324967:10340140:-1 gene:K11E8.1 11/11 A 
K11E8.1c ENSEMBL cdna:known chromosome:CEL140:IV:10324967:10340140:-1 gene:K11E8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177921 12 3 NM_001028122 172058_x_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028123 187759_s_at (11), 193459_s_at (11)
NM_001028124 172058_x_at (9), 175820_s_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028125 172058_x_at (11), 175821_s_at (11), 175824_s_at (11), 187759_s_at (11), 193459_s_at (11)
NM_001028126 172058_x_at (11), 175820_s_at (11), 175821_s_at (11), 193459_s_at (11)
NM_001028127 172058_x_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028128 172058_x_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028129 172058_x_at (11), 175820_s_at (11), 175821_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028130 172058_x_at (11), 173423_at (11), 193459_s_at (11)
NM_001028131 175821_s_at (11), 175824_s_at (11), 193459_s_at (11), 193463_s_at (11)
NM_001028132 172058_x_at (9), 175821_s_at (11), 175824_s_at (11), 193459_s_at (11)
NM_001028133 175821_s_at (11), 193463_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10324972-10340146(-) 100.0 100.0
Public Domain and Genome References
Ensembl K11E8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94244 Hypothetical protein K11E8.1c [Caenorhabditis elegans] emb|CAC42359.1| Hypothetical protein K11E8.1c [Caenorhabditis elegans] ref|NP_001023295.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] 0.0
blast CAC42324 Hypothetical protein K11E8.1h [Caenorhabditis elegans] emb|CAC42362.1| Hypothetical protein K11E8.1h [Caenorhabditis elegans] ref|NP_001023300.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] gb|AAF63322.1| calcium/calmodulin-dependent protein kinase II isoform D [Caenorhabditis elegans] 0.0
blast CAC42325 Hypothetical protein K11E8.1e [Caenorhabditis elegans] emb|CAC42363.1| Hypothetical protein K11E8.1e [Caenorhabditis elegans] ref|NP_001023297.1| UNCoordinated family member (unc-43) [Caenorhabditis elegans] gb|AAF63321.1| calcium/calmodulin-dependent protein kinase II isoform C [Caenorhabditis elegans] 0.0
blast CAE60719 Hypothetical protein CBG04391 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-67
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 6.0E-68
hanks 2.1.5 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DmCamKII 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.3E-97
Sequence
Target Sequence 
>C. ELEGANS:175820_S_AT
tcgggagttcttcgaacttccgactccactggatcagtcgcatcgaatggatcaacgacg
cacgatgcgtcacaggtggcaggaacatcgtcacaaccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGGAGTTCTTCGAACTTCCGACT 445 599 943 Antisense
GGAGTTCTTCGAACTTCCGACTCCA 555 517 946 Antisense
ACTTCCGACTCCACTGGATCAGTCG 110 105 958 Antisense
CCGACTCCACTGGATCAGTCGCATC 467 263 962 Antisense
CCACTGGATCAGTCGCATCGAATGG 22 273 968 Antisense
ATCAGTCGCATCGAATGGATCAACG 212 29 975 Antisense
GAATGGATCAACGACGCACGATGCG 151 333 987 Antisense
GCACGATGCGTCACAGGTGGCAGGA 584 315 1002 Antisense
GCGTCACAGGTGGCAGGAACATCGT 298 291 1009 Antisense
GGTGGCAGGAACATCGTCACAACCG 394 497 1017 Antisense
TGGCAGGAACATCGTCACAACCGAC 306 545 1019 Antisense
Sequence Source GenBank