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[175819_s_at] steroid hormone receptor

Description g8979463 /REP_DB=GenBank Identifier /GB=AF224743.1 /PROTEIN_GB=AAF82248.1 /CHR=5 /FEA=Mapped Transcript /DEF=leucine-rich repeat-containing G protein-coupledreceptor
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 72      6grp_total > 74      4grp_total > 01      6grp_highest_sub > 04_05_06      6grp_cgc > 76      6grp_high1_sub > In      6grp_cgc_sub > 03_04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 294.1
(-3)
P 		309.8
(-2.7)
P 		397.5
(-0.8)
P 		577.8
(3)
P 		284
B 365.9
(-1.9)
P 		336.5
(-2.7)
P 		324.6
(-3)
P 		543.2
(3)
P 		219
C 386.2
(-1.5)
P 		357.7
(-3)
P 		399.9
(-0.7)
P 		468.8
(3)
P 		111
avr 348.7
(-2.6) 		334.7
(-3) 		374
(-1.8) 		529.9
(3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 299.6
(-3)
P 		388
(-0.9)
P 		395.8
(-0.7)
P 		492
(1.6)
P 		541.5
(2.8)
P 		550.6
(3)
P 		251
B 312.1
(-3)
P 		324.6
(-2.6)
P 		481.2
(1.9)
P 		517.4
(3)
P 		425.9
(0.3)
P 		446.4
(0.9)
P 		205
C 270.5
(-3)
P 		402.2
(-0.2)
P 		481.9
(1.5)
P 		555.1
(3)
P 		460.1
(1)
P 		509.5
(2)
P 		285
avr 294.1
(-3) 		371.6
(-1) 		453
(1.2) 		521.5
(3) 		475.8
(1.8) 		502.2
(2.5) 		227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 107.1
(3)
P 		67.3
(-3)
P 		103.9
(2.5)
P 		84.6
(-0.4)
P 		40
B 116.7
(3)
P 		83.1
(-1.9)
P 		75.2
(-3)
P 		115.8
(2.9)
P 		42
C 127.8
(1.8)
P 		102.8
(-0.6)
P 		139.4
(3)
P 		79
(-3)
P 		60
avr 117.2
(3) 		84.4
(-3) 		106.2
(1) 		93.1
(-1.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 55.2
(-3)
P 		138
(1.6)
P 		86.2
(-1.3)
P 		124.8
(0.9)
P 		163.4
(3)
P 		134
(1.4)
P 		108
B 108.6
(-2.9)
P 		108
(-3)
P 		116.8
(-2.2)
P 		137
(-0.3)
P 		173
(3)
P 		166.5
(2.4)
P 		65
C 100.3
(-3)
P 		122.7
(-1.1)
P 		122.7
(-1.1)
P 		111.6
(-2)
P 		148.9
(1.1)
P 		170.6
(3)
P 		70
avr 88
(-3) 		122.9
(-0.2) 		108.6
(-1.3) 		124.5
(-0) 		161.8
(3) 		157
(2.6) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175819_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19904
Sequence Type Exemplar sequence
Representative Public ID 8979463 NCBI
Target Description g8979463 /REP_DB=GenBank Identifier /GB=AF224743.1 /PROTEIN_GB=AAF82248.1 /CHR=5 /FEA=Mapped Transcript /DEF=leucine-rich repeat-containing G protein-coupledreceptor
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073147 NCBI Caenorhabditis elegans C50H2.1 (C50H2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000033475 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9893216:9897209:1 11/11 None
C50H2.1 ENSEMBL cdna:known chromosome:CEL140:V:9892527:9897418:1 gene:C50H2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033462 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9892541-9897209(+) 100.0 100.0
Public Domain and Genome References
Gene Title steroid hormone receptor
Gene Symbol fshr-1
Ensembl C50H2.1
Entrez Gene 179381 Entrez gene
SwissProt Q18759 EMBL-EBI
WormBase CE28214 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.4922.1.S1_AT similar to follicle stimulating hormone receptor isoform 1 precursor cfa
DROSOPHILA_2:1631104_S_AT Fsh-Tsh-like receptor dm
DROSGENOME1:143873_AT Fsh-Tsh-like receptor dm
CHICKEN:GGA.475.1.S1_AT follicle stimulating hormone receptor gga
CHICKEN:GGA.475.1.S2_AT follicle stimulating hormone receptor gga
HG-U95AV2:561_AT follicle stimulating hormone receptor hs
HC-G110:561_AT follicle stimulating hormone receptor hs
HG-U133_PLUS_2:211201_AT follicle stimulating hormone receptor hs
HG-U133A:211201_AT follicle stimulating hormone receptor hs
HG-FOCUS:211201_AT follicle stimulating hormone receptor hs
HG-U133A_2:211201_AT follicle stimulating hormone receptor hs
HG-U95AV2:562_G_AT follicle stimulating hormone receptor hs
HC-G110:562_G_AT follicle stimulating hormone receptor hs
HUGENEFL:M65085_AT follicle stimulating hormone receptor hs
U133_X3P:G182772_3P_AT follicle stimulating hormone receptor hs
MOUSE430A_2:1450810_AT follicle stimulating hormone receptor mm
MOE430A:1450810_AT follicle stimulating hormone receptor mm
MOUSE430_2:1450810_AT follicle stimulating hormone receptor mm
MG-U74AV2:101810_AT follicle stimulating hormone receptor mm
RG-U34A:L02842_AT follicle stimulating hormone receptor rn
RG-U34A:L02842_G_AT follicle stimulating hormone receptor rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
16500 protein-hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98249 Hypothetical protein C50H2.1 [Caenorhabditis elegans] ref|NP_505548.1| C50H2.1 [Caenorhabditis elegans] gb|AAF82248.1| leucine-rich repeat-containing G protein-coupled receptor [Caenorhabditis elegans] 0.0
blast CAE72274 Hypothetical protein CBG19394 [Caenorhabditis briggsae] 0.0
blast CAE57120 Hypothetical protein CBG25031 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.83
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0016
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.5E-12
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.83
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0016
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.5E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505548.1 8 11-28,435-457,469-491,511-533,553-575,597-619,640-662,672-694
C50H2.1 8 11-28,435-457,469-491,511-533,553-575,597-619,640-662,672-694
GENEFINDER00000033475 7 460-482,494-516,536-558,578-600,622-644,665-687,697-719
Sequence
Target Sequence 
>C. ELEGANS:175819_S_AT
agctctctatcaaacttctatcattctcaaccacctggagcacatcgaagaagcagagat
gaaccaacaagtccatctggaatgcatttggcagttacccagacaacatcactaaacagt
acaccaaggggatcagatgtttcccgtgcttctgatggaatgctttttgattatgatcga
agagccagtgcatctccgagagtttcgtttgatattccaatttctccaacaactccaaga
tctgatagaaagaataggatatctcttctcaagagaatagtttcctcaataccagaagta
tccgatctttccgaacattcaagtgaaagccatcatgagcatgtacctcatcctagaaga
aaattgagatcatcattgaatagaatccttgcacttggaagaaggcaagaaggctcagca
gattctggaagaggatccattgcatcttctgctggctctcgtgatcaaaatgaaagagta
tccttaaccagcaacgcttcttcaatattgagtccacttttatctccgacaaattcaaac
attttaatactacctcccgaaccatcaaaaaatcgtcgaaagtccactccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCTCTATCAAACTTCTATCATT 218 81 2176 Antisense
TATCATTCTCAACCACCTGGAGCAC 623 659 2194 Antisense
TCAGATGTTTCCCGTGCTTCTGATG 20 625 2308 Antisense
GATCGAAGAGCCAGTGCATCTCCGA 649 415 2350 Antisense
GATATTCCAATTTCTCCAACAACTC 496 427 2386 Antisense
AAGTATCCGATCTTTCCGAACATTC 343 157 2471 Antisense
AGAGGATCCATTGCATCTTCTGCTG 316 67 2605 Antisense
TCTGCTGGCTCTCGTGATCAAAATG 600 609 2623 Antisense
AGAGTATCCTTAACCAGCAACGCTT 420 67 2650 Antisense
TTGAGTCCACTTTTATCTCCGACAA 619 701 2683 Antisense
AAAAATCGTCGAAAGTCCACTCCAG 647 129 2743 Antisense
Sequence Source GenBank