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[175817_at]

Description g3420841 /REP_DB=GenBank Identifier /GB=AF082011.1 /PROTEIN_GB=AAD03023.1 /CHR=X /FEA=Mapped Transcript /DEF=UDP-N-acetylglucosamine:a-3-D-mannosideb-1,2-N-acetylglucosaminyltransferase I
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 41      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 61      6grp_total > 41      4grp_total > 56      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 312.5
(-1)
P 		368.7
(3)
P 		284.6
(-3)
P 		304
(-1.6)
P 		84
B 290.9
(-1.9)
P 		274.8
(-3)
P 		362.1
(3)
P 		304.2
(-1)
P 		87
C 312.9
(-1)
P 		322.1
(-0.5)
P 		386.5
(3)
P 		277.1
(-3)
P 		109
avr 305.4
(-1.7) 		321.9
(0.3) 		344.4
(3) 		295.1
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 370.3
(-0.2)
P 		406.4
(0.9)
P 		473.4
(3)
P 		398
(0.6)
P 		345.9
(-1)
P 		282.3
(-3)
P 		191
B 400
(-0.6)
P 		448.3
(0.2)
P 		637.5
(3)
P 		372.9
(-1)
P 		307
(-2)
P 		237.2
(-3)
P 		400
C 387
(0.6)
P 		398
(1)
P 		399.4
(1)
P 		459
(3)
P 		277.5
(-3)
P 		285.1
(-2.7)
P 		182
avr 385.8
(0) 		417.6
(0.8) 		503.4
(3) 		410
(0.6) 		310.1
(-1.9) 		268.2
(-3) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 113.8
(3)
P 		80
(0.1)
P 		74.4
(-0.4)
P 		44.5
(-3)
P 		69
B 92.8
(3)
P 		67.9
(-2.3)
P 		83.9
(1.1)
P 		64.8
(-3)
P 		28
C 103.6
(0.9)
P 		92.6
(0.1)
P 		134.7
(3)
P 		46.7
(-3)
P 		88
avr 103.4
(3) 		80.2
(0.3) 		97.7
(2.3) 		52
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 68.3
(-3)
P 		144.5
(3)
P 		103.1
(-0.3)
P 		100.9
(-0.4)
P 		104.4
(-0.2)
P 		68.7
(-3)
P 		76
B 139.2
(1.6)
P 		149.2
(2.5)
P 		154.8
(3)
P 		98.8
(-2.1)
P 		124.7
(0.3)
P 		88.5
(-3)
P 		66
C 143.4
(3)
P 		121.4
(0.5)
P 		101.7
(-1.7)
P 		92.3
(-2.7)
P 		89.8
(-3)
P 		95.5
(-2.4)
P 		54
avr 117
(0.6) 		138.4
(3) 		119.9
(1) 		97.3
(-1.5) 		106.3
(-0.6) 		84.2
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20001
Sequence Type Exemplar sequence
Representative Public ID 3420841 NCBI
Target Description g3420841 /REP_DB=GenBank Identifier /GB=AF082011.1 /PROTEIN_GB=AAD03023.1 /CHR=X /FEA=Mapped Transcript /DEF=UDP-N-acetylglucosamine:a-3-D-mannosideb-1,2-N-acetylglucosaminyltransferase I
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171727(11), NM_001029520(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171727 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-12) (gly-12) mRNA, complete cds. 11/11 A 
NM_001029520 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-12) (gly-12) mRNA, complete cds. 10/11 None
F48E3.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:7485809:7490641:1 gene:F48E3.1 11/11 A 
F48E3.1b ENSEMBL cdna:known chromosome:CEL140:X:7486012:7490645:1 gene:F48E3.1 10/11 A 
F48E3.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:7486117:7490640:1 gene:F48E3.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040277 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7485807-7490454(+) 100.0 100.0
Public Domain and Genome References
Ensembl F48E3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99958 Glycosylation related protein 12, isoform a [Caenorhabditis elegans] ref|NP_741838.1| GLYcosylation related family member (gly-12) [Caenorhabditis elegans] gb|AAD03023.1| UDP-N-acetylglucosamine:a-3-D-mannoside b-1,2-N-acetylglucosaminyltransferase I [Caenorhabditis elegans] 0.0
blast AAM69111 Glycosylation related protein 12, isoform b [Caenorhabditis elegans] ref|NP_001024691.1| GLYcosylation related family member (gly-12) [Caenorhabditis elegans] 0.0
blast CAE70220 Hypothetical protein CBG16700 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004139 EMBL-EBI Glycosyl transferase, family 13 3.6E-97
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741838.1 1 13-32
NP_001024691.1 1 13-32
F48E3.1a.2 1 13-32
F48E3.1b 1 13-32
F48E3.1a.1 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:175817_AT
gacgaggtacaactgtcctgtgacgatacgggtgattgtaagcgttctttcgaaagaaca
tttgtcggacctgttcagttatatgcgtgcatgtcagatcaatcaactcgtcaaacttgc
tgctgtaactatgatttttgcaacggttcttcaaataacaatagtatttatttaattatt
atgctggctgtcattataatttattcattccaatgctctcttcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAGGTACAACTGTCCTGTGACG 189 379 1732 Antisense
GTCCTGTGACGATACGGGTGATTGT 435 471 1746 Antisense
GGGTGATTGTAAGCGTTCTTTCGAA 569 497 1761 Antisense
TCGAAAGAACATTTGTCGGACCTGT 323 599 1781 Antisense
GGACCTGTTCAGTTATATGCGTGCA 526 523 1798 Antisense
ATGCGTGCATGTCAGATCAATCAAC 53 43 1814 Antisense
ATCAACTCGTCAAACTTGCTGCTGT 385 27 1833 Antisense
AACTTGCTGCTGTAACTATGATTTT 496 137 1845 Antisense
TATGATTTTTGCAACGGTTCTTCAA 91 655 1861 Antisense
AATTATTATGCTGGCTGTCATTATA 630 175 1905 Antisense
TATTCATTCCAATGCTCTCTTCAGT 696 661 1933 Antisense
Sequence Source GenBank