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[175815_at]

Description Y34F4.E /REP_DB=WormBase Gene ID /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      4grp_high_8_8 > 06      6grp_total > 94      4grp_total > 02      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1767
1 2 3 4 range
A 63.8
(-3)
A 		85.4
(-2.9)
P 		108.5
(-2.8)
P 		1830.3
(3)
P 		1767
B 92.2
(-3)
P 		92.2
(-3)
P 		118.2
(-2.9)
P 		1662.1
(3)
P 		1570
C 74.5
(-3)
P 		106.7
(-2.9)
P 		70.8
(-3)
P 		1594.6
(3)
P 		1524
avr 76.8
(-3) 		94.8
(-2.9) 		99.2
(-2.9) 		1695.7
(3) 		1619

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 982
1 2 3 4 5 6 range
A 119
(-2.6)
A 		52.1
(-3)
A 		222.7
(-2)
P 		824.1
(1.7)
P 		1029.5
(3)
P 		696.6
(1)
P 		977
B 96.6
(-3)
P 		99.3
(-3)
P 		200.7
(-2.3)
P 		712.5
(0.9)
P 		1034.4
(3)
P 		684.7
(0.8)
P 		938
C 118.9
(-2.9)
P 		96.6
(-3)
P 		290.6
(-1.7)
P 		823.6
(1.8)
P 		1000.7
(3)
P 		611.6
(0.4)
P 		904
avr 111.5
(-2.8) 		82.7
(-3) 		238
(-2) 		786.7
(1.5) 		1021.5
(3) 		664.3
(0.7) 		939
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 23.2
(-2.9)
A 		18.5
(-3)
P 		28.4
(-2.8)
P 		267.9
(3)
P 		249
B 29.4
(-2.9)
P 		22.8
(-3)
P 		27.4
(-2.9)
P 		354.2
(3)
P 		331
C 24.7
(-3)
P 		30.7
(-2.9)
P 		24.7
(-3)
P 		268.9
(3)
P 		244
avr 25.8
(-3) 		24
(-3) 		26.8
(-2.9) 		297
(3) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 21.9
(-2.9)
A 		18.5
(-3)
A 		48.5
(-2.4)
P 		209
(0.9)
P 		310.6
(3)
P 		169.6
(0.1)
P 		292
B 33.6
(-3)
P 		33.1
(-3)
P 		48.7
(-2.8)
P 		188.7
(-0.6)
P 		420.2
(3)
P 		255.3
(0.4)
P 		387
C 44.1
(-2.7)
P 		29.5
(-3)
P 		74
(-2.1)
P 		165.6
(-0.2)
P 		323.8
(3)
P 		204.8
(0.6)
P 		294
avr 33.2
(-2.9) 		27
(-3) 		57.1
(-2.4) 		187.8
(-0) 		351.5
(3) 		209.9
(0.4) 		325
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175815_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19031
Sequence Type Exemplar sequence
Representative Public ID Y34F4.E NCBI
Target Description Y34F4.E /REP_DB=WormBase Gene ID /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064912 NCBI Caenorhabditis elegans Y34F4.2 (Y34F4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000027784 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1010547:1012120:1 11/11 None
Y34F4.2 ENSEMBL cdna:known chromosome:CEL140:III:1010540:1011351:1 gene:Y34F4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007478 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1010546-1011351(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y34F4.2
Entrez Gene 175262 Entrez gene
SwissProt Q9GR68 EMBL-EBI
WormBase CE26642 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG37943 Hypothetical protein Y34F4.2 [Caenorhabditis elegans] ref|NP_497313.1| Y34F4.2 [Caenorhabditis elegans] 1.0E-103
blast AAG37943 Hypothetical protein Y34F4.2 [Caenorhabditis elegans] ref|NP_497313.1| Y34F4.2 [Caenorhabditis elegans] 4.0E-99
blast AAG37944 Hypothetical protein Y34F4.1 [Caenorhabditis elegans] ref|NP_497315.1| Y34F4.1 [Caenorhabditis elegans] 3.0E-15
blast AAG37944 Hypothetical protein Y34F4.1 [Caenorhabditis elegans] ref|NP_497315.1| Y34F4.1 [Caenorhabditis elegans] 6.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497313.1 4 12-34,62-84,97-119,139-158
Y34F4.2 4 12-34,62-84,97-119,139-158
GENEFINDER00000027784 4 12-34,62-84,97-119,139-158
Sequence
Target Sequence 
>C. ELEGANS:175815_AT
gaagctctgcttctacggaatttctcttctaatcggatttttgctccacgtggtcggaac
cgtctctaattccattttcatatactacttcaagcctgtatgggtcgaaaagcatctggc
aaactttggaatcgatcttggggtaccttactggtggggtccctcggccaaggtagctgt
ctacacatgcctcttatcgtctattggtcaaaatctagttgtcgtggcgtatatctttct
gttttatgagtcgcaaaaccaccaatattctcggaagtttatatatttgctgaaattcat
caaatatatgttgctagctagtactctgctcttaattgttggcctaaacttgctcacatt
gtcggcaaagtgggatgaggagcatgagtttgttcggtatggctactcattatggcttct
agttgcatcgatttgcattagccccttcaacattctggttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCTGCTTCTACGGAATTTCT 326 343 24 Antisense
TAATCGGATTTTTGCTCCACGTGGT 512 635 53 Antisense
GAACCGTCTCTAATTCCATTTTCAT 234 347 80 Antisense
GAATCGATCTTGGGGTACCTTACTG 535 327 152 Antisense
AAGGTAGCTGTCTACACATGCCTCT 51 161 193 Antisense
ACATGCCTCTTATCGTCTATTGGTC 124 107 208 Antisense
TCGTGGCGTATATCTTTCTGTTTTA 354 605 245 Antisense
AGTCGCAAAACCACCAATATTCTCG 369 61 272 Antisense
GTTGCTAGCTAGTACTCTGCTCTTA 294 439 333 Antisense
TTGGCCTAAACTTGCTCACATTGTC 224 707 362 Antisense
TTAGCCCCTTCAACATTCTGGTTGT 586 681 461 Antisense
Sequence Source Affymetrix Proprietary Database