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[175811_s_at]

Description g7381607 /REP_DB=GenBank Identifier /GB=AF226156.1 /PROTEIN_GB=AAF61564.1 /CHR=2 /FEA=Mapped Transcript /DEF=RFX-like transcription factor DAF-19
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 16      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 21      6grp_total > 15      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 979
1 2 3 4 range
A 1654.8
(3)
P 		1005.3
(-1.8)
P 		847.2
(-3)
P 		847.4
(-3)
P 		808
B 1662
(3)
P 		922.8
(-1.5)
P 		682.7
(-3)
P 		993.5
(-1.1)
P 		979
C 1324.5
(3)
P 		794.6
(-2)
P 		683.4
(-3)
P 		853.2
(-1.4)
P 		641
avr 1547.1
(3) 		907.6
(-1.7) 		737.8
(-3) 		898
(-1.8) 		809

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1684
1 2 3 4 5 6 range
A 2384.1
(3)
P 		1501.6
(-0.5)
P 		1015.9
(-2.4)
P 		909.7
(-2.8)
P 		889.1
(-2.9)
P 		869
(-3)
P 		1515
B 1766.7
(3)
P 		1749.3
(2.9)
P 		1078.8
(-0.9)
P 		1217.4
(-0.1)
P 		766.1
(-2.6)
P 		699.9
(-3)
P 		1067
C 1467.7
(2.3)
P 		1557.6
(3)
P 		1259.7
(0.8)
P 		1037.1
(-0.9)
P 		760.3
(-3)
P 		848.3
(-2.3)
P 		797
avr 1872.8
(3) 		1602.8
(1.5) 		1118.1
(-1.2) 		1054.7
(-1.6) 		805.2
(-3) 		805.7
(-3) 		1068
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 479
1 2 3 4 range
A 602.5
(3)
P 		218.2
(-1.8)
P 		221.5
(-1.8)
P 		124
(-3)
P 		479
B 530
(3)
P 		227.9
(-1.9)
P 		158.2
(-3)
P 		211.7
(-2.1)
P 		372
C 438.4
(3)
P 		228.5
(-1.3)
P 		238.2
(-1.1)
P 		143.9
(-3)
P 		295
avr 523.6
(3) 		224.9
(-1.9) 		206
(-2.2) 		159.9
(-3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 439.5
(1.2)
P 		534
(3)
P 		221.3
(-2.8)
P 		230.7
(-2.6)
P 		268.3
(-1.9)
P 		211.6
(-3)
P 		322
B 614.7
(3)
P 		582.3
(2.5)
P 		262
(-3)
P 		322.4
(-2)
P 		311.3
(-2.1)
P 		261
(-3)
P 		354
C 544
(3)
P 		475.3
(1.8)
P 		320.6
(-1)
P 		208.6
(-3)
P 		246
(-2.3)
P 		284
(-1.7)
P 		335
avr 532.7
(3) 		530.5
(3) 		268
(-2.7) 		253.9
(-3) 		275.2
(-2.5) 		252.2
(-3) 		281
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175811_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19705
Sequence Type Exemplar sequence
Representative Public ID 7381607 NCBI
Target Description g7381607 /REP_DB=GenBank Identifier /GB=AF226156.1 /PROTEIN_GB=AAF61564.1 /CHR=2 /FEA=Mapped Transcript /DEF=RFX-like transcription factor DAF-19
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026968 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-19) (daf-19) mRNA, complete cds. 11/11 None
F33H1.1a ENSEMBL cdna:known chromosome:CEL140:II:10157437:10169232:-1 gene:F33H1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174577 2 1 NM_001026968 175811_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10157428-10169262(-) 98.92 100.0
Public Domain and Genome References
Ensembl F33H1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88701 Hypothetical protein F33H1.1a [Caenorhabditis elegans] ref|NP_001022139.1| abnormal DAuer Formation family member (daf-19) [Caenorhabditis elegans] gb|AAF63475.1| RFX-type transcription factor DAF-19 short variant [Caenorhabditis elegans] 0.0
blast CAC42295 Hypothetical protein F33H1.1b [Caenorhabditis elegans] ref|NP_001022140.1| abnormal DAuer Formation family member (daf-19) [Caenorhabditis elegans] gb|AAF61564.1| RFX-like transcription factor DAF-19 [Caenorhabditis elegans] sp|Q09555|DAF19_CAEEL RFX-like transcription factor daf-19 (Abnormal dauer formation protein 19) 0.0
blast XP_395142 PREDICTED: similar to CG6312-PA [Apis mellifera] 5.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR003150 EMBL-EBI DNA-binding RFX 4.6E-60
Sequence
Target Sequence 
>C. ELEGANS:175811_S_AT
tcacctccattttctaccatagatctcacttctcctaaaatgttctaaaattctagtctc
ccgtctccatcttgcccctctcccggataaaaactgtgacataattagcactgtagttca
attcattttgttttcacaaattgctttccacgaaagcttctacccctatgatctcttcta
cacaaaccctagtgatatacaatgccaatttccagtcagattatcgttttcagaaaaaat
tataattaaaaattctataataatgccaagagatatttccccttatttatcgaaatttgg
cccctattttcatgttttgtgatttgcatttctctcctctcaacctacttcattcgaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCTCCATTTTCTACCATAGATC 105 627 2481 Antisense
GATCTCACTTCTCCTAAAATGTTCT 4 419 2502 Antisense
TTCTAAAATTCTAGTCTCCCGTCTC 666 691 2523 Antisense
GCCCCTCTCCCGGATAAAAACTGTG 158 285 2554 Antisense
TGCTTTCCACGAAAGCTTCTACCCC 599 577 2622 Antisense
TATGATCTCTTCTACACAAACCCTA 332 657 2647 Antisense
ATACAATGCCAATTTCCAGTCAGAT 659 23 2677 Antisense
ATGCCAAGAGATATTTCCCCTTATT 95 41 2743 Antisense
TGGCCCCTATTTTCATGTTTTGTGA 440 543 2778 Antisense
TTTTGTGATTTGCATTTCTCTCCTC 72 679 2795 Antisense
CCTCTCAACCTACTTCATTCGAAGA 78 269 2816 Antisense
Sequence Source GenBank