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[175810_at] zinc-finger protein

Description g3767589 /REP_DB=GenBank Identifier /GB=AB006208.1 /PROTEIN_GB=BAA33854.1 /CHR=5 /FEA=Mapped Transcript /DEF=cytoplasmic zinc-finger protein
Cluster 6grp_high1_10_10 > 88      6grp_total > 88      4grp_total > 08      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 8.2
(-3)
A 		33
(-2.5)
A 		105.5
(-1)
A 		302.7
(3)
P 		295
B 35.9
(-2.9)
A 		27.8
(-3)
A 		112.4
(-1.5)
P 		371.4
(3)
P 		344
C 40.9
(-3)
A 		67
(-2.4)
A 		109.3
(-1.3)
P 		283.3
(3)
P 		242
avr 28.3
(-3) 		42.6
(-2.7) 		109.1
(-1.3) 		319.1
(3) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6720
1 2 3 4 5 6 range
A 110.8
(-3)
A 		71.8
(-3)
A 		66.9
(-3)
A 		230.1
(-2.9)
P 		3592.5
(0.2)
P 		6776.8
(3)
P 		6710
B 141.4
(-2.9)
A 		58
(-3)
P 		78.4
(-3)
P 		366.5
(-2.7)
P 		2846.8
(-0.3)
P 		6255.7
(3)
P 		6198
C 102.2
(-3)
P 		56.6
(-3)
M 		73
(-3)
P 		273.7
(-2.8)
P 		3135.1
(-0.2)
P 		6769.7
(3)
P 		6713
avr 118.1
(-2.9) 		62.1
(-3) 		72.8
(-3) 		290.1
(-2.8) 		3191.5
(-0.1) 		6600.7
(3) 		6539
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 3
(-3)
A 		7.2
(-2.4)
A 		27.6
(0.6)
A 		44.3
(3)
P 		41
B 11.5
(-2.6)
A 		6.9
(-3)
A 		26.1
(-1.4)
P 		79.1
(3)
P 		72
C 13.5
(-3)
A 		19.3
(-2)
A 		38.1
(1.3)
P 		47.8
(3)
P 		34
avr 9.3
(-3) 		11.1
(-2.8) 		30.6
(-0.3) 		57.1
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2318
1 2 3 4 5 6 range
A 20.4
(-3)
A 		25.5
(-3)
A 		14.6
(-3)
A 		58.4
(-2.8)
P 		1084
(0.9)
P 		1649.9
(3)
P 		1635
B 49.2
(-2.9)
A 		19.3
(-3)
P 		19
(-3)
P 		97.1
(-2.8)
P 		1156.6
(-0)
P 		2332.7
(3)
P 		2314
C 37.9
(-2.9)
P 		17.3
(-3)
M 		18.6
(-3)
P 		55
(-2.9)
P 		1014.5
(-0.3)
P 		2266.2
(3)
P 		2249
avr 35.8
(-2.9) 		20.7
(-3) 		17.4
(-3) 		70.2
(-2.8) 		1085
(0.1) 		2082.9
(3) 		2066
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175810_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19908
Sequence Type Exemplar sequence
Representative Public ID 3767589 NCBI
Target Description g3767589 /REP_DB=GenBank Identifier /GB=AB006208.1 /PROTEIN_GB=BAA33854.1 /CHR=5 /FEA=Mapped Transcript /DEF=cytoplasmic zinc-finger protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072771 NCBI Caenorhabditis elegans POsterior Segregation family member (pos-1) (pos-1) mRNA, complete cds. 11/11 A 
F52E1.1 ENSEMBL cdna:known chromosome:CEL140:V:8416675:8417844:1 gene:F52E1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8416677-8417845(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc-finger protein
Gene Symbol pos-1
Ensembl F52E1.1
Entrez Gene 179224 Entrez gene
SwissProt Q20667 EMBL-EBI
WormBase CE04629 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37036 Posterior segregation protein 1 [Caenorhabditis elegans] ref|NP_505172.1| POsterior Segregation family member (pos-1) [Caenorhabditis elegans] dbj|BAA33854.1| cytoplasmic zinc-finger protein [Caenorhabditis elegans] 1.0E-152
blast AAU82119 POS-1 [Caenorhabditis remanei] 6.0E-79
blast AAU82118 POS-1 [Caenorhabditis briggsae] emb|CAE66049.1| Hypothetical protein CBG11249 [Caenorhabditis briggsae] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 4.3E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 8.7E-14
Sequence
Target Sequence 
>C. ELEGANS:175810_AT
tcatcactagtttctctcgtcgaaatttctgatcttgactaacatgtactttctattttt
tacttatggattatataatcaagtccaataacctggtgcagtcccaaggacatcatcaat
aattttccccatttttgtcgttctttttcttctcgagtccgaccccaaaatgttgtattc
acaggctttcaaaactcacccccacattcccacatttgtatctagtctgtatattattgt
tatcttgaattttaccaatgtttcgttctcaattgcatagccctcgttatgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCACTAGTTTCTCTCGTCGAAA 688 619 805 Antisense
GAAATTTCTGATCTTGACTAACATG 663 361 826 Antisense
GACTAACATGTACTTTCTATTTTTT 533 371 841 Antisense
TAACCTGGTGCAGTCCCAAGGACAT 517 637 893 Antisense
GACATCATCAATAATTTTCCCCATT 245 371 913 Antisense
GAGTCCGACCCCAAAATGTTGTATT 506 395 959 Antisense
ATTCACAGGCTTTCAAAACTCACCC 311 9 981 Antisense
TTCCCACATTTGTATCTAGTCTGTA 282 695 1011 Antisense
GAATTTTACCAATGTTTCGTTCTCA 545 173 1051 Antisense
TGTTTCGTTCTCAATTGCATAGCCC 479 561 1063 Antisense
CAATTGCATAGCCCTCGTTATGTGG 267 179 1074 Antisense
Sequence Source GenBank