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[175805_at]

Description g5762324 /REP_DB=GenBank Identifier /GB=AF172351.1 /PROTEIN_GB=AAD51103.1 /CHR=4 /FEA=Mapped Transcript /DEF=meiotic chromosome core protein
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 15      6grp_total > 97      4grp_total > 08      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 49.5
(-3)
P 		59.9
(-2.6)
P 		106.5
(-0.9)
P 		210.4
(3)
P 		161
B 38.9
(-3)
M 		53.6
(-2.4)
A 		86.3
(-1.1)
P 		188.4
(3)
P 		150
C 39.2
(-3)
A 		56.6
(-2.4)
M 		85.9
(-1.4)
P 		214.5
(3)
P 		175
avr 42.5
(-3) 		56.7
(-2.5) 		92.9
(-1.1) 		204.4
(3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1154
1 2 3 4 5 6 range
A 40.3
(-2.9)
P 		30.2
(-3)
P 		86.3
(-2.5)
P 		194.3
(-1.6)
P 		746.6
(3)
P 		702.5
(2.6)
P 		716
B 30
(-3)
P 		36.8
(-3)
P 		63.5
(-2.8)
P 		174.2
(-2.2)
P 		816.3
(1.1)
P 		1175.5
(3)
P 		1146
C 21.7
(-3)
M 		68.8
(-2.7)
P 		72.4
(-2.7)
P 		240.8
(-1.7)
P 		466.2
(-0.3)
P 		1019.5
(3)
P 		998
avr 30.7
(-3) 		45.3
(-2.9) 		74.1
(-2.7) 		203.1
(-1.9) 		676.4
(1.1) 		965.8
(3) 		935
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 18
(-1.3)
P 		13
(-3)
P 		27.8
(2)
P 		30.8
(3)
P 		18
B 12.4
(-3)
M 		13.2
(-2.8)
A 		20
(-1.4)
P 		40.1
(3)
P 		28
C 13
(-3)
A 		16.3
(-2.1)
M 		29.9
(1.4)
P 		36.2
(3)
P 		23
avr 14.5
(-2.9) 		14.2
(-3) 		25.9
(0.3) 		35.7
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 431
1 2 3 4 5 6 range
A 7.4
(-3)
P 		10.8
(-2.9)
P 		18.8
(-2.7)
P 		49.3
(-1.8)
P 		225.3
(3)
P 		171
(1.5)
P 		218
B 10.4
(-3)
P 		12.2
(-3)
P 		15.4
(-2.9)
P 		46.1
(-2.5)
P 		331.6
(1.5)
P 		438.3
(3)
P 		428
C 8
(-3)
M 		21
(-2.8)
P 		18.4
(-2.8)
P 		48.4
(-2.3)
P 		150.9
(-0.4)
P 		341.3
(3)
P 		333
avr 8.6
(-3) 		14.7
(-2.9) 		17.5
(-2.8) 		47.9
(-2.2) 		235.9
(1.4) 		316.9
(3) 		308
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19865
Sequence Type Exemplar sequence
Representative Public ID 5762324 NCBI
Target Description g5762324 /REP_DB=GenBank Identifier /GB=AF172351.1 /PROTEIN_GB=AAD51103.1 /CHR=4 /FEA=Mapped Transcript /DEF=meiotic chromosome core protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068677 NCBI Caenorhabditis elegans High Incidence of Males (increased X chromosome loss) family member (him-3) (him-3) mRNA, complete cds. 11/11 A 
ZK381.1 ENSEMBL cdna:known chromosome:CEL140:IV:6977503:6978742:1 gene:ZK381.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6977506-6978748(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol him-3
Ensembl ZK381.1
Entrez Gene 177462 Entrez gene
SwissProt Q23472 EMBL-EBI
WormBase CE07625 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
794 condensed nuclear chromosome inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG00053 High incidence of males (increased x chromosome loss) protein 3 [Caenorhabditis elegans] ref|NP_501078.1| High Incidence of Males (increased X chromosome loss) family member (him-3) [Caenorhabditis elegans] gb|AAD51103.1| meiotic chromosome core protein [Caenorhabditis elegans] 1.0E-164
blast CAE58967 Hypothetical protein CBG02239 [Caenorhabditis briggsae] 9.0E-68
blast CAE61539 Hypothetical protein CBG05444 [Caenorhabditis briggsae] 5.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR003511 EMBL-EBI DNA-binding HORMA 1.1E-74
Sequence
Target Sequence 
>C. ELEGANS:175805_AT
gtcgaaaagttttcactcatgtgcaatgtttctcttgttttatatttttagccattgttt
ttataatttcattgattgtcgtgcttttgtcttctcttgtgtgatatcaatctatcttct
tcacgtatagtttcatctgtttgattgagttatttttctttcactgtaagtctggtgttt
cgtagattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAAAAGTTTTCACTCATGTGCA 109 475 897 Antisense
TCACTCATGTGCAATGTTTCTCTTG 57 627 909 Antisense
TGTTTTATATTTTTAGCCATTGTTT 565 561 932 Antisense
TAATTTCATTGATTGTCGTGCTTTT 400 635 960 Antisense
TGCTTTTGTCTTCTCTTGTGTGATA 10 581 978 Antisense
GTCTTCTCTTGTGTGATATCAATCT 309 469 985 Antisense
ATATCAATCTATCTTCTTCACGTAT 610 19 1000 Antisense
CTTCACGTATAGTTTCATCTGTTTG 46 223 1015 Antisense
CATCTGTTTGATTGAGTTATTTTTC 126 213 1030 Antisense
GTTATTTTTCTTTCACTGTAAGTCT 364 447 1045 Antisense
GTAAGTCTGGTGTTTCGTAGATTTA 309 461 1062 Antisense
Sequence Source GenBank