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[175804_s_at]

Description g8886419 /REP_DB=GenBank Identifier /GB=AF162674.1 /PROTEIN_GB=AAF80462.1 /CHR=5 /FEA=Mapped Transcript /DEF=CNT-like nucleoside transporter
Cluster 6grp_high1_10_10 > 91      4grp_high_8_8 > 11      6grp_total > 93      4grp_total > 21      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 130.7
(3)
P 		115.9
(2)
P 		45
(-3)
A 		126.4
(2.7)
A 		86
B 140.6
(1.3)
P 		99.9
(-2.3)
M 		91.4
(-3)
P 		160.6
(3)
P 		69
C 134
(0.3)
P 		91.2
(-2.4)
P 		81.2
(-3)
M 		177.8
(3)
P 		97
avr 135.1
(1.6) 		102.3
(-0.8) 		72.5
(-3) 		154.9
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 133.5
(2.6)
M 		72
(-2.4)
A 		132.4
(2.5)
P 		112.5
(0.9)
P 		139
(3)
P 		65
(-3)
P 		74
B 86.5
(-2.9)
P 		84.9
(-3)
P 		89.9
(-2.6)
P 		118.2
(-0.2)
P 		156.1
(3)
P 		112.6
(-0.7)
P 		71
C 67.9
(-3)
P 		88.4
(-1.2)
P 		111.2
(0.8)
P 		88
(-1.2)
P 		136.3
(3)
P 		117
(1.3)
P 		68
avr 96
(-1.6) 		81.8
(-3) 		111.2
(-0.2) 		106.2
(-0.6) 		143.8
(3) 		98.2
(-1.4) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 47.6
(3)
P 		25.2
(-0.8)
P 		11.8
(-3)
A 		18.5
(-1.9)
A 		36
B 44.8
(3)
P 		24.7
(-2.1)
M 		21.2
(-3)
P 		34.2
(0.3)
P 		24
C 44.4
(3)
P 		26.2
(-3)
P 		28.3
(-2.3)
M 		30
(-1.7)
P 		18
avr 45.6
(3) 		25.4
(-1.8) 		20.4
(-3) 		27.6
(-1.3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 24.6
(-1)
M 		25.6
(-0.7)
A 		28.8
(-0)
P 		28.5
(-0.1)
P 		41.9
(3)
P 		15.8
(-3)
P 		26
B 30.1
(-1.8)
P 		28.3
(-2.1)
P 		21.8
(-3)
P 		31.3
(-1.6)
P 		63.4
(3)
P 		42
(-0.1)
P 		42
C 25.2
(-1.3)
P 		27
(-0.9)
P 		28.3
(-0.6)
P 		17.7
(-3)
P 		44.1
(3)
P 		39.2
(1.9)
P 		26
avr 26.6
(-2.8) 		27
(-2.7) 		26.3
(-2.9) 		25.8
(-3) 		49.8
(3) 		32.3
(-1.4) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175804_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19947
Sequence Type Exemplar sequence
Representative Public ID 8886419 NCBI
Target Description g8886419 /REP_DB=GenBank Identifier /GB=AF162674.1 /PROTEIN_GB=AAF80462.1 /CHR=5 /FEA=Mapped Transcript /DEF=CNT-like nucleoside transporter
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071565 NCBI Caenorhabditis elegans F27E11.2a (F27E11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000039157 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3459565:3462781:1 11/11 None
F27E11.2a.2 ENSEMBL cdna:known chromosome:CEL140:V:3459545:3462827:1 gene:F27E11.2 11/11 None
F27E11.2a.3 ENSEMBL cdna:known chromosome:CEL140:V:3459566:3462781:1 gene:F27E11.2 11/11 None
F27E11.2a.1 ENSEMBL cdna:known chromosome:CEL140:V:3460045:3462781:1 gene:F27E11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171922 7/11 Cross Hyb Matching Probes None
SNAP00000039155 4/11 Cross Hyb Matching Probes None
F27E11.2b 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178769 2 1 NM_071565 175804_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3459544-3462822(+) 99.72 99.72
Public Domain and Genome References
Ensembl F27E11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65256 Hypothetical protein F27E11.2a [Caenorhabditis elegans] ref|NP_503966.2| F27E11.2a [Caenorhabditis elegans] 0.0
blast AAF80462 CNT-like nucleoside transporter [Caenorhabditis elegans] 0.0
blast CAE74622 Hypothetical protein CBG22413 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002668 EMBL-EBI Na+ dependent nucleoside transporter 1.0E-126
Pfam IPR002668 EMBL-EBI Na+ dependent nucleoside transporter 2.5E-104
Pfam IPR002668 EMBL-EBI Na+ dependent nucleoside transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503966.2 13 46-68,78-95,119-141,146-163,170-192,202-224,244-266,313-335,342-364,374-396,409-431,476-498,511-533
F27E11.2a.2 13 46-68,78-95,119-141,146-163,170-192,202-224,244-266,313-335,342-364,374-396,409-431,476-498,511-533
F27E11.2a.3 13 46-68,78-95,119-141,146-163,170-192,202-224,244-266,313-335,342-364,374-396,409-431,476-498,511-533
F27E11.2a.1 13 46-68,78-95,119-141,146-163,170-192,202-224,244-266,313-335,342-364,374-396,409-431,476-498,511-533
GENEFINDER00000039157 12 58-80,90-107,131-153,158-175,182-204,214-236,256-278,325-347,404-426,441-463,507-529,544-566
Sequence
Target Sequence 
>C. ELEGANS:175804_S_AT
tcgacactctgtgctcagcaggagttgcgttggtccctacggtttttgcaattggtgcaa
cgttggtggttatcatgtcacttttagcatttttggatgcagttatggagtatatcggag
acctcattgggtacgatggttggacatttcaaatgctgtttggttacgcgttctttccat
tggcctatatgatgggtgtcaatgataattcagatcaaactttattagttgcacagctaa
tgggtaccaagaccgcggtcaacgaatttgtggcctacaacaatttgggaattttacaaa
aagcaggcaagctccaaccaaaatcagtcgttattgccacatacgccctttgcggtttct
cgaatttctcctcaatgggaatgtcaattgaatttcttggcggtctggctccaagtaaaa
gatccacaatttcaaagctagtgctccgtgctctttgcgcagggtccattgcgtgcttta
tgaatgccactgtcgcaggcattttgatctcatccccagtgatttgccagtcatctcaaa
aaagtgatacgtgtttccggattccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACACTCTGTGCTCAGCAGGAGT 263 601 1158 Antisense
ATGCTGTTTGGTTACGCGTTCTTTC 193 41 1310 Antisense
GCGTTCTTTCCATTGGCCTATATGA 440 291 1325 Antisense
GACCGCGGTCAACGAATTTGTGGCC 505 381 1408 Antisense
TCAGTCGTTATTGCCACATACGCCC 465 621 1481 Antisense
ATTGAATTTCTTGGCGGTCTGGCTC 274 5 1544 Antisense
TTCAAAGCTAGTGCTCCGTGCTCTT 627 685 1588 Antisense
TGCGCAGGGTCCATTGCGTGCTTTA 284 583 1613 Antisense
GTCGCAGGCATTTTGATCTCATCCC 391 475 1649 Antisense
CCCAGTGATTTGCCAGTCATCTCAA 150 259 1672 Antisense
AGTGATACGTGTTTCCGGATTCCTA 524 59 1700 Antisense
Sequence Source GenBank