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[175802_at]

Description g3253307 /REP_DB=GenBank Identifier /GB=AF061513.1 /PROTEIN_GB=AAC24362.1 /CHR=3 /FEA=Mapped Transcript /DEF=candidate adaptor protein CED-6
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 84      6grp_total > 39      4grp_total > 63      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 713
(3)
P 		386.3
(-3)
P 		548.3
(-0)
P 		445.8
(-1.9)
P 		327
B 523.3
(1.7)
P 		486.6
(-0.6)
P 		545.3
(3)
P 		447.2
(-3)
P 		98
C 591.6
(-2.2)
P 		580.3
(-3)
P 		666.6
(3)
P 		630.4
(0.5)
P 		86
avr 609.3
(3) 		484.4
(-3) 		586.7
(1.9) 		507.8
(-1.9) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 565
1 2 3 4 5 6 range
A 583
(2.4)
P 		522.6
(0.5)
P 		582.2
(2.4)
P 		412.5
(-3)
P 		602.8
(3)
P 		551.2
(1.4)
P 		190
B 850.9
(3)
P 		574.1
(0.1)
P 		286.3
(-3)
P 		514.7
(-0.6)
P 		554.2
(-0.2)
P 		811.2
(2.6)
P 		565
C 693.7
(3)
P 		541.6
(-0.5)
P 		434.9
(-3)
P 		492.7
(-1.7)
P 		574.9
(0.2)
P 		554.3
(-0.2)
P 		259
avr 709.2
(3) 		546.1
(-0.6) 		434.5
(-3) 		473.3
(-2.2) 		577.3
(0.1) 		638.9
(1.5) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 259.6
(3)
P 		83.8
(-2.4)
P 		143.3
(-0.6)
P 		65.3
(-3)
P 		194
B 166.9
(3)
P 		120.2
(-0.9)
P 		126.4
(-0.4)
P 		95.3
(-3)
P 		72
C 195.8
(1.3)
P 		166.8
(-0.1)
P 		232.3
(3)
P 		106.3
(-3)
P 		126
avr 207.4
(3) 		123.6
(-1.2) 		167.3
(1) 		89
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 107.5
(-2.8)
P 		185.9
(3)
P 		126.8
(-1.4)
P 		104.6
(-3)
P 		181.9
(2.7)
P 		134.2
(-0.8)
P 		81
B 296.1
(2.8)
P 		191.1
(0.1)
P 		69.5
(-3)
P 		136.3
(-1.3)
P 		225.2
(1)
P 		302.5
(3)
P 		233
C 257.1
(3)
P 		165.3
(-0.5)
P 		110.7
(-2.6)
P 		99.1
(-3)
P 		186
(0.3)
P 		185.6
(0.3)
P 		158
avr 220.2
(3) 		180.8
(1) 		102.3
(-3) 		113.3
(-2.4) 		197.7
(1.9) 		207.4
(2.3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175802_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19783
Sequence Type Exemplar sequence
Representative Public ID 3253307 NCBI
Target Description g3253307 /REP_DB=GenBank Identifier /GB=AF061513.1 /PROTEIN_GB=AAC24362.1 /CHR=3 /FEA=Mapped Transcript /DEF=candidate adaptor protein CED-6
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065802 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-6) (ced-6) mRNA, complete cds. 11/11 A 
F56D2.7.1 ENSEMBL cdna:known chromosome:CEL140:III:5595722:5598025:1 gene:F56D2.7 11/11 A 
F56D2.7.2 ENSEMBL cdna:known chromosome:CEL140:III:5595724:5598004:1 gene:F56D2.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5595720-5598020(+) 99.77 99.77
Public Domain and Genome References
Gene Title
Gene Symbol ced-6
Ensembl F56D2.7
Entrez Gene 175773 Entrez gene
SwissProt O76337 EMBL-EBI
WormBase CE33657 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601965_AT similar to GULP, engulfment adaptor PTB domain containing 1 cfa
CANINE_2:CFA.5913.1.A1_AT similar to GULP, engulfment adaptor PTB domain containing 1 cfa
CANINE_2:CFA.5913.1.A1_S_AT similar to GULP, engulfment adaptor PTB domain containing 1 cfa
CANINE_2:CFAAFFX.22795.1.S1_AT similar to GULP, engulfment adaptor PTB domain containing 1 cfa
DROSOPHILA_2:1638738_S_AT dm
DROSGENOME1:146882_AT dm
CHICKEN:GGAAFFX.25542.1.S1_AT similar to GULP, engulfment adaptor PTB domain containing 1; PTB domain adaptor protein CED-6; engulfment adapter protein gga
HG-U95AV2:41419_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133_PLUS_2:215913_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A_2:215913_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A:215913_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A:204237_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133_PLUS_2:204237_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A_2:204237_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133_PLUS_2:223837_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133B:223837_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133_PLUS_2:204235_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A_2:204235_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A:204235_S_AT GULP, engulfment adaptor PTB domain containing 1 hs
HU35KSUBA:RC_AA446944_AT GULP, engulfment adaptor PTB domain containing 1 hs
HU35KSUBD:RC_AA431753_AT GULP, engulfment adaptor PTB domain containing 1 hs
U133_X3P:G7705317_3P_AT GULP, engulfment adaptor PTB domain containing 1 hs
U133_X3P:G6409467_3P_A_AT GULP, engulfment adaptor PTB domain containing 1 hs
U133_X3P:G12654538_3P_X_AT GULP, engulfment adaptor PTB domain containing 1 hs
U133_X3P:HS.107056.2.S1_3P_A_AT GULP, engulfment adaptor PTB domain containing 1 hs
U133_X3P:223837_3P_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A_2:215915_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133_PLUS_2:215915_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U133A:215915_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U95C:51275_F_AT GULP, engulfment adaptor PTB domain containing 1 hs
HG-U95E:80196_AT GULP, engulfment adaptor PTB domain containing 1 hs
MOUSE430_2:1453771_AT GULP, engulfment adaptor PTB domain containing 1 mm
MOE430B:1453771_AT GULP, engulfment adaptor PTB domain containing 1 mm
MOE430B:1432092_A_AT GULP, engulfment adaptor PTB domain containing 1 mm
MOUSE430_2:1432092_A_AT GULP, engulfment adaptor PTB domain containing 1 mm
MU19KSUBC:TC38731_AT GULP, engulfment adaptor PTB domain containing 1, mRNA (cDNA clone MGC:29398 IMAGE:5068339) mm
RG-U34A:RC_AI639037_AT GULP, engulfment adaptor PTB domain containing 1 (predicted) rn
RAE230A:1376285_AT GULP, engulfment adaptor PTB domain containing 1 (predicted) rn
RAT230_2:1376285_AT GULP, engulfment adaptor PTB domain containing 1 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
45309 protein phosphorylated amino acid binding inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52680 Cell death abnormality protein 6 [Caenorhabditis elegans] ref|NP_498203.2| CEll Death abnormality family member (ced-6) [Caenorhabditis elegans] gb|AAC24362.1| candidate adaptor protein CED-6 [Caenorhabditis elegans] 0.0
blast CAE64299 Hypothetical protein CBG08974 [Caenorhabditis briggsae] 1.0E-130
blast XP_392026 PREDICTED: similar to ENSANGP00000021640 [Apis mellifera] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 1.1E-55
Sequence
Target Sequence 
>C. ELEGANS:175802_AT
ccaattttctacgtttcacggtgatttttttccattgcattcttgtactattcttgtatc
attcttttactagcagggtttggccgaacggcttgccaaatttattagctgaatgtattt
atttgcacgctatcatttttaaaaattacttacttacttacatgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAATTTTCTACGTTTCACGGTGAT 229 273 1519 Antisense
CACGGTGATTTTTTTCCATTGCATT 565 199 1535 Antisense
TTTCCATTGCATTCTTGTACTATTC 456 669 1547 Antisense
GTACTATTCTTGTATCATTCTTTTA 621 459 1563 Antisense
ATCATTCTTTTACTAGCAGGGTTTG 567 29 1576 Antisense
GCAGGGTTTGGCCGAACGGCTTGCC 300 289 1591 Antisense
GGCCGAACGGCTTGCCAAATTTATT 475 541 1600 Antisense
ACGGCTTGCCAAATTTATTAGCTGA 146 95 1606 Antisense
GCTGAATGTATTTATTTGCACGCTA 123 297 1626 Antisense
TATTTGCACGCTATCATTTTTAAAA 109 663 1638 Antisense
AAATTACTTACTTACTTACATGTGA 68 115 1661 Antisense
Sequence Source GenBank