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[175801_at] GATA-binding transcription factor like

Description g4929360 /REP_DB=GenBank Identifier /GB=AF146517.1 /PROTEIN_GB=AAD33964.1 /CHR=X /FEA=Mapped Transcript /DEF=GATA transcription factor ELT-3
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 66      6grp_total > 42      4grp_total > 23      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1024
1 2 3 4 range
A 2173.4
(3)
P 		1664.6
(-0.7)
P 		1352
(-3)
P 		1795.3
(0.2)
P 		821
B 2253.3
(3)
P 		1229.2
(-3)
P 		1361.1
(-2.2)
P 		1910.4
(1)
P 		1024
C 2088.9
(3)
P 		1325.5
(-3)
P 		1476.3
(-1.8)
P 		2061.9
(2.8)
P 		763
avr 2171.9
(3) 		1406.4
(-2.9) 		1396.5
(-3) 		1922.5
(1.1) 		775

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 730
1 2 3 4 5 6 range
A 1765.6
(3)
P 		1101.8
(-2.7)
P 		1581
(1.4)
P 		1264.7
(-1.3)
P 		1321.5
(-0.8)
P 		1068
(-3)
P 		698
B 1361.5
(-0.2)
P 		1212.1
(-2.9)
P 		1303.9
(-1.2)
P 		1535.1
(3)
P 		1207.4
(-3)
P 		1245.7
(-2.3)
P 		328
C 1126.8
(-1.8)
P 		1204.4
(-0.8)
P 		1490.1
(3)
P 		1326.7
(0.8)
P 		1060
(-2.7)
P 		1035.9
(-3)
P 		454
avr 1418
(2.3) 		1172.8
(-2) 		1458.3
(3) 		1375.5
(1.5) 		1196.3
(-1.6) 		1116.5
(-3) 		342
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 529
1 2 3 4 range
A 791.3
(3)
P 		361.3
(-1.9)
P 		353.4
(-2)
P 		262.8
(-3)
P 		529
B 718.6
(3)
P 		303.6
(-3)
P 		315.4
(-2.8)
P 		407.1
(-1.5)
P 		415
C 691.5
(3)
P 		381.1
(-2.4)
P 		514.5
(-0.1)
P 		347.7
(-3)
P 		344
avr 733.8
(3) 		348.7
(-2.9) 		394.4
(-2.2) 		339.2
(-3) 		395

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 325.5
(-0.2)
P 		391.8
(2.7)
P 		344.3
(0.6)
P 		320.8
(-0.4)
P 		398.8
(3)
P 		260
(-3)
P 		139
B 473.7
(2.4)
P 		403.5
(-0)
P 		316.6
(-3)
P 		406.6
(0.1)
P 		490.5
(3)
P 		464.5
(2.1)
P 		174
C 417.6
(3)
P 		367.5
(1)
P 		379.3
(1.5)
P 		266.8
(-3)
P 		343
(0)
P 		346.8
(0.2)
P 		151
avr 405.6
(2.6) 		387.6
(1.2) 		346.7
(-1.8) 		331.4
(-3) 		410.8
(3) 		357.1
(-1.1) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20011
Sequence Type Exemplar sequence
Representative Public ID 4929360 NCBI
Target Description g4929360 /REP_DB=GenBank Identifier /GB=AF146517.1 /PROTEIN_GB=AAD33964.1 /CHR=X /FEA=Mapped Transcript /DEF=GATA transcription factor ELT-3
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077920 NCBI Caenorhabditis elegans Erythroid-Like Transcription factor family member (elt-3) (elt-3) mRNA, complete cds. 11/11 A 
K02B9.4 ENSEMBL cdna:known chromosome:CEL140:X:13938663:13941124:1 gene:K02B9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13938662-13941137(+) 99.45 99.45
Public Domain and Genome References
Gene Title GATA-binding transcription factor like
Gene Symbol elt-3
Ensembl K02B9.4
Entrez Gene 181503 Entrez gene
SwissProt Q21128 EMBL-EBI
WormBase CE23844 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93510 Hypothetical protein K02B9.4 [Caenorhabditis elegans] ref|NP_510321.1| Erythroid-Like Transcription factor family member (elt-3) [Caenorhabditis elegans] gb|AAD33964.1| GATA transcription factor ELT-3 [Caenorhabditis elegans] 1.0E-125
blast CAE63063 Hypothetical protein CBG07341 [Caenorhabditis briggsae] 6.0E-94
blast AAF55262 CG10278-PA [Drosophila melanogaster] ref|NP_650516.2| CG10278-PA [Drosophila melanogaster] gb|AAO47880.1| LD08432p [Drosophila melanogaster] dbj|BAD00020.1| transcription factor dGATAe [Drosophila melanogaster] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 7.8E-18
Sequence
Target Sequence 
>C. ELEGANS:175801_AT
caatgtacacaataagcttctccgaatatgccaaatttccgacgaacctcccacgactga
aacttgatacctatcctctgtaacctagtagctctggtagagtatcttgccattcgcaat
gatctaatctcattttctctcattctctattaaaacccacaaaataactgaaaaaaaata
gaaacagaccaccatgactgtgatatagcgtggaatgcctctctctctctctcttctgaa
aatcggaatatacaattttcatcaactttgattttgatctgctactggtatcgaaccaaa
tcatcaataagacaataatcaatcaattttgctaactgttcatgtttcataattagtagg
cataacattcaatattttgtttttgacttattcttctttgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGTACACAATAAGCTTCTCCGA 342 183 840 Antisense
ATATGCCAAATTTCCGACGAACCTC 525 19 865 Antisense
AACCTCCCACGACTGAAACTTGATA 589 145 884 Antisense
GAAACTTGATACCTATCCTCTGTAA 60 357 898 Antisense
TATCCTCTGTAACCTAGTAGCTCTG 138 651 911 Antisense
GAGTATCTTGCCATTCGCAATGATC 282 399 939 Antisense
TCTCTCATTCTCTATTAAAACCCAC 105 613 975 Antisense
GATATAGCGTGGAATGCCTCTCTCT 27 427 1041 Antisense
TTTGATCTGCTACTGGTATCGAACC 466 667 1112 Antisense
TTTTGCTAACTGTTCATGTTTCATA 122 679 1166 Antisense
GTTTTTGACTTATTCTTCTTTGCTA 492 449 1218 Antisense
Sequence Source GenBank