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[175800_at] xnf7

Description g2906147 /REP_DB=GenBank Identifier /GB=AF047027.1 /PROTEIN_GB=AAC14263.1 /CHR=3 /FEA=Mapped Transcript /DEF=B box zinc finger protein Ncl-1
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 18      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 40      6grp_total > 19      4grp_total > 26      6grp_highest_sub > Cu      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 529
(-2.3)
P 		599.8
(-1)
P 		493.1
(-3)
P 		814.2
(3)
P 		321
B 428.6
(-3)
P 		645.6
(-0.5)
P 		532.6
(-1.8)
P 		939.8
(3)
P 		511
C 551.8
(-3)
P 		719.5
(3)
P 		600.2
(-1.3)
P 		689.9
(1.9)
P 		168
avr 503.1
(-3) 		655
(-0.1) 		542
(-2.3) 		814.6
(3) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 865
1 2 3 4 5 6 range
A 838.7
(3)
P 		656.4
(0.5)
P 		395
(-3)
P 		443
(-2.4)
P 		796.8
(2.4)
P 		610.8
(-0.1)
P 		444
B 691.8
(2.3)
P 		569.3
(0.3)
P 		375
(-3)
P 		731.1
(3)
P 		456.1
(-1.6)
P 		531.5
(-0.4)
P 		356
C 1239.7
(3)
P 		469.2
(-2.9)
P 		604.3
(-1.9)
P 		522.4
(-2.5)
P 		649.5
(-1.6)
P 		461.5
(-3)
P 		778
avr 923.4
(3) 		565
(-1.6) 		458.1
(-3) 		565.5
(-1.6) 		634.1
(-0.7) 		534.6
(-2) 		465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 192.6
(3)
P 		130.2
(-2.1)
P 		128.9
(-2.2)
P 		119.2
(-3)
P 		73
B 136.7
(-2)
P 		159.5
(-0.2)
P 		123.4
(-3)
P 		200.3
(3)
P 		77
C 182.7
(1.3)
P 		206.9
(2.9)
P 		209.2
(3)
P 		116.3
(-3)
P 		93
avr 170.7
(3) 		165.5
(1.8) 		153.8
(-1) 		145.3
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 154.6
(-0.3)
P 		233.4
(2.7)
P 		86
(-3)
P 		112.4
(-2)
P 		240.5
(3)
P 		148.7
(-0.6)
P 		155
B 240.7
(3)
P 		189.5
(0.9)
P 		91.1
(-3)
P 		193.6
(1.1)
P 		185.3
(0.8)
P 		198.2
(1.3)
P 		150
C 459.5
(3)
P 		143.2
(-2.4)
P 		153.8
(-2.2)
P 		105.1
(-3)
P 		210.2
(-1.2)
P 		154.5
(-2.2)
P 		354
avr 284.9
(3) 		188.7
(-0.3) 		110.3
(-3) 		137
(-2.1) 		212
(0.5) 		167.1
(-1) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19757
Sequence Type Exemplar sequence
Representative Public ID 2906147 NCBI
Target Description g2906147 /REP_DB=GenBank Identifier /GB=AF047027.1 /PROTEIN_GB=AAC14263.1 /CHR=3 /FEA=Mapped Transcript /DEF=B box zinc finger protein Ncl-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066283(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066283 NCBI Caenorhabditis elegans ZK112.2 (xnf7) mRNA, complete cds. 11/11 A 
ZK112.2 ENSEMBL cdna:known chromosome:CEL140:III:7731310:7737994:1 gene:ZK112.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7731307-7737627(+) 97.06 100.0
Public Domain and Genome References
Gene Title xnf7
Gene Symbol ncl-1
Ensembl ZK112.2
Entrez Gene 176084 Entrez gene
SwissProt P34611 EMBL-EBI
WormBase CE00373 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639217_S_AT brain tumor dm
DROSGENOME1:153872_AT brain tumor dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28185 Abnormal nucleoli protein 1 [Caenorhabditis elegans] ref|NP_498684.1| ZK112.2 [Caenorhabditis elegans] sp|P34611|NCL1_CAEEL B-box type zinc-finger protein ncl-1 gb|AAC14263.1| B box zinc finger protein Ncl-1 [Caenorhabditis elegans] 0.0
blast CAE66868 Hypothetical protein CBG12245 [Caenorhabditis briggsae] 0.0
blast XP_396305 PREDICTED: similar to ENSANGP00000006075 [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000315 EMBL-EBI Zn-finger, B-box 5.3E-13
Pfam IPR000315 EMBL-EBI Zn-finger, B-box 2.9E-7
Pfam IPR001258 EMBL-EBI NHL repeat 1.3E-12
Pfam IPR001258 EMBL-EBI NHL repeat 4.3E-6
Pfam IPR001258 EMBL-EBI NHL repeat 5.5E-8
Pfam IPR001258 EMBL-EBI NHL repeat 4.9E-7
Pfam IPR001258 EMBL-EBI NHL repeat 6.6E-5
Sequence
Target Sequence 
>C. ELEGANS:175800_AT
aagtccctcacatatgttatcttttttccttcttattctaattttcgcttaaaaatgcac
ttctctacccatcccccgtcccaattctaacctttatcattttttatttttcattcccct
aagctcctccccctttacttttccgtaatttcgagtagatttcttatttatatgggcagt
tttcttgttatgtgtgtttaaaggctccacttaaaattcccatcccaaccccaaaaacat
tggagcattcgatactattttttagtggttttgttgttgattttggtgtcaaccctactc
gtccttaagctttttaaccggttttgtaccctcttaaaattcctattttctgtttttttt
tttcatttttcatcgtcgtttttatgttgtttcttttttcttcatttcttcggcaggctg
gttcctgttttttccccaagcaacttcatattatttttggcgagagaaacttgatgttat
tttcttttttgttgtatttttcttttttattagctttttcttgcttttttcccacaaaaa
tcgtctgtttcccatttaccttccactgaaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCCCTCACATATGTTATCTTTT 346 157 3447 Antisense
TATCTTTTTTCCTTCTTATTCTAAT 314 659 3464 Antisense
TTAAAAATGCACTTCTCTACCCATC 521 683 3495 Antisense
CGTCCCAATTCTAACCTTTATCATT 74 247 3523 Antisense
GGGCAGTTTTCTTGTTATGTGTGTT 416 493 3620 Antisense
TAAAGGCTCCACTTAAAATTCCCAT 495 635 3645 Antisense
TGATTTTGGTGTCAACCCTACTCGT 650 563 3724 Antisense
TCGGCAGGCTGGTTCCTGTTTTTTC 570 607 3856 Antisense
GTTTTTTCCCCAAGCAACTTCATAT 667 445 3873 Antisense
CCCACAAAAATCGTCTGTTTCCCAT 144 259 3977 Antisense
TCCCATTTACCTTCCACTGAAAATT 640 597 3996 Antisense
Sequence Source GenBank