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[175799_at]

Description g3702825 /REP_DB=GenBank Identifier /GB=AF056576.1 /PROTEIN_GB=AAC78598.1 /CHR=2 /FEA=Mapped Transcript /DEF=high mobility group protein 1.1
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 39      6grp_total > 57      4grp_total > 50      6grp_highest_sub > Cu      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4282
1 2 3 4 range
A 8800.9
(1)
P 		10135
(3)
P 		9426
(1.9)
P 		6125
(-3)
P 		4010
B 8387.4
(-3)
P 		10328.3
(2.8)
P 		10407.1
(3)
P 		9794.3
(1.2)
P 		2020
C 8768.9
(-1.8)
P 		10300.2
(3)
P 		8898.7
(-1.4)
P 		8394.9
(-3)
P 		1905
avr 8652.4
(-1.5) 		10254.5
(3) 		9577.3
(1.1) 		8104.7
(-3) 		2150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3272
1 2 3 4 5 6 range
A 8576.2
(0.9)
P 		8289.2
(0.3)
P 		6677.7
(-2.8)
P 		6876.3
(-2.5)
P 		6595.4
(-3)
P 		9672.3
(3)
P 		3077
B 6400.5
(-3)
P 		7639.5
(1.3)
P 		6695.8
(-2)
P 		7223
(-0.1)
P 		6429.4
(-2.9)
P 		8125.5
(3)
P 		1725
C 7878.9
(1)
P 		6861.2
(-2.6)
P 		7905.3
(1.1)
P 		6746.4
(-3)
P 		7632.6
(0.2)
P 		8424.8
(3)
P 		1678
avr 7618.5
(-0.6) 		7596.6
(-0.7) 		7092.9
(-2.3) 		6948.6
(-2.8) 		6885.8
(-3) 		8740.9
(3) 		1855
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2308
1 2 3 4 range
A 3204.4
(3)
P 		2200
(0.4)
P 		2464.1
(1.1)
P 		896.6
(-3)
P 		2308
B 2674.7
(3)
P 		2550.8
(1.7)
P 		2411.6
(0.3)
P 		2087.2
(-3)
P 		588
C 2902.7
(2.3)
P 		2961.4
(2.5)
P 		3101.5
(3)
P 		1415.5
(-3)
P 		1686
avr 2927.3
(3) 		2570.7
(1.5) 		2659.1
(1.9) 		1466.4
(-3) 		1461

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1673
1 2 3 4 5 6 range
A 1581
(-2.5)
P 		2948
(3)
P 		1454.3
(-3)
P 		1744
(-1.8)
P 		1990.2
(-0.8)
P 		2354.9
(0.6)
P 		1494
B 2227.1
(-0.4)
P 		2542.9
(0.9)
P 		1625.9
(-3)
P 		1913.1
(-1.8)
P 		2612.2
(1.2)
P 		3030
(3)
P 		1404
C 2920.4
(3)
P 		2093.6
(-0.2)
P 		2012
(-0.5)
P 		1356.7
(-3)
P 		2469.8
(1.3)
P 		2820.3
(2.6)
P 		1564
avr 2242.8
(0.2) 		2528.2
(1.8) 		1697.4
(-2.9) 		1671.3
(-3) 		2357.4
(0.9) 		2735.1
(3) 		1064
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19726
Sequence Type Exemplar sequence
Representative Public ID 3702825 NCBI
Target Description g3702825 /REP_DB=GenBank Identifier /GB=AF056576.1 /PROTEIN_GB=AAC78598.1 /CHR=2 /FEA=Mapped Transcript /DEF=high mobility group protein 1.1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064569(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064569 NCBI Caenorhabditis elegans HMG family member (hmg-1.1) (hmg-1.1) mRNA, complete cds. 11/11 A 
Y48B6A.14.1 ENSEMBL cdna:known chromosome:CEL140:II:14250584:14251343:1 gene:Y48B6A.14 11/11 None
Y48B6A.14.2 ENSEMBL cdna:known chromosome:CEL140:II:14250586:14251343:1 gene:Y48B6A.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015945 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14250581-14251333(+) 94.84 99.0
Public Domain and Genome References
Gene Title
Gene Symbol hmg-1.1
Ensembl Y48B6A.14
Entrez Gene 175081 Entrez gene
SwissProt Q9U2A0 EMBL-EBI
WormBase CE29377 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54448 Hypothetical protein Y48B6A.14 [Caenorhabditis elegans] ref|NP_496970.1| HMG family member (hmg-1.1) [Caenorhabditis elegans] gb|AAC78598.1| high mobility group protein 1.1 [Caenorhabditis elegans] 3.0E-49
blast CAE73247 Hypothetical protein CBG20663 [Caenorhabditis briggsae] 8.0E-42
blast AAA16307 high mobility group protein 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 8.9E-23
Sequence
Target Sequence 
>C. ELEGANS:175799_AT
gaagtcccaataggctttgtcgcccccgtgttctgattcaaatgatactcaacttccaat
ctatccatccatacccactctctccattattgttccaccctggccttgtgtgctctcaag
tcgaagcctatttagatctcaatataatttctcgttagctatcgcttgaacacattgtcc
accaaaaaataccaccaccaccacacattatgtgccctccactctctctctctctctctc
tctctctctcaacaaaacaatctgttccatcatttttttttgtaaatcccccaaaaactc
ctgaattttatccattctgttgtacttttcgagcgatttcgaatcgcacataccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCCCAATAGGCTTTGTCGCCC 553 335 312 Antisense
GCCCCCGTGTTCTGATTCAAATGAT 351 285 333 Antisense
ATACTCAACTTCCAATCTATCCATC 90 25 356 Antisense
GCCTTGTGTGCTCTCAAGTCGAAGC 407 281 414 Antisense
AGTCGAAGCCTATTTAGATCTCAAT 259 61 430 Antisense
GATCTCAATATAATTTCTCGTTAGC 35 419 446 Antisense
ATTTCTCGTTAGCTATCGCTTGAAC 179 15 458 Antisense
ATCGCTTGAACACATTGTCCACCAA 381 35 472 Antisense
TGTCCACCAAAAAATACCACCACCA 278 555 487 Antisense
AACAATCTGTTCCATCATTTTTTTT 259 135 567 Antisense
CGATTTCGAATCGCACATACCACCA 30 249 645 Antisense
Sequence Source GenBank