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[175798_at] oligopeptide transporter

Description g7672729 /REP_DB=GenBank Identifier /GB=AF142441.1 /PROTEIN_GB=AAF66614.1 /CHR=1 /FEA=Mapped Transcript /DEF=H+-oligopeptide symporter OPT-3
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_high_8_8 > 24      6grp_highest_nonorm > 90      6grp_total > 93      4grp_total > 47      6grp_highest_sub > 05      6grp_cgc > 98      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 213.7
(3)
P 		87.9
(-1.9)
P 		107
(-1.2)
P 		60.7
(-3)
A 		153
B 198.5
(3)
P 		108.1
(-1.5)
P 		100
(-1.9)
P 		77.4
(-3)
P 		121
C 240.7
(3)
P 		115.1
(-3)
P 		124.4
(-2.6)
P 		166
(-0.6)
P 		126
avr 217.6
(3) 		103.7
(-2.9) 		110.5
(-2.5) 		101.4
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 434
1 2 3 4 5 6 range
A 107
(-2.8)
P 		187.8
(-1.3)
P 		96.6
(-3)
P 		235.6
(-0.4)
P 		414.4
(3)
P 		117.6
(-2.6)
P 		318
B 138.6
(-1.7)
P 		219.4
(0.3)
P 		128.1
(-2)
P 		196.9
(-0.3)
P 		330.6
(3)
P 		87.8
(-3)
P 		243
C 183.7
(-2.1)
P 		202.1
(-1.9)
P 		138.6
(-2.8)
P 		226.5
(-1.5)
P 		521.7
(3)
P 		127.5
(-3)
P 		394
avr 143.1
(-2.4) 		203.1
(-1.2) 		121.1
(-2.8) 		219.7
(-0.9) 		422.2
(3) 		111
(-3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 77.8
(3)
P 		19.1
(-2.1)
P 		28
(-1.3)
P 		8.9
(-3)
A 		69
B 63.3
(3)
P 		26.7
(-1.7)
P 		23.2
(-2.1)
P 		16.5
(-3)
P 		47
C 79.7
(3)
P 		33.1
(-2.4)
P 		43.4
(-1.2)
P 		28
(-3)
P 		52
avr 73.6
(3) 		26.3
(-2.1) 		31.5
(-1.5) 		17.8
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 19.7
(-3)
P 		66.8
(-0.3)
P 		21
(-2.9)
P 		59.8
(-0.7)
P 		125
(3)
P 		28.6
(-2.5)
P 		105
B 48.2
(-2)
P 		73
(-0.6)
P 		31.1
(-3)
P 		52.1
(-1.8)
P 		134.3
(3)
P 		32.7
(-2.9)
P 		103
C 68.1
(-1.5)
P 		61.7
(-1.8)
P 		35.3
(-3)
P 		45.5
(-2.5)
P 		168.8
(3)
P 		42.7
(-2.7)
P 		134
avr 45.3
(-2.1) 		67.2
(-1) 		29.1
(-3) 		52.5
(-1.8) 		142.7
(3) 		34.7
(-2.7) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175798_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19697
Sequence Type Exemplar sequence
Representative Public ID 7672729 NCBI
Target Description g7672729 /REP_DB=GenBank Identifier /GB=AF142441.1 /PROTEIN_GB=AAF66614.1 /CHR=1 /FEA=Mapped Transcript /DEF=H+-oligopeptide symporter OPT-3
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059366 NCBI Caenorhabditis elegans OligoPeptide Transporter family member (opt-3) (opt-3) mRNA, complete cds. 11/11 A 
F56F4.5 ENSEMBL cdna:known chromosome:CEL140:I:6141374:6146114:1 gene:F56F4.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6141377-6146115(+) 100.0 100.0
Public Domain and Genome References
Gene Title oligopeptide transporter
Gene Symbol opt-3
Ensembl F56F4.5
Entrez Gene 172298 Entrez gene
SwissProt O01840 EMBL-EBI
WormBase CE11268 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264736_AT proton-dependent oligopeptide transport (POT) family protein at
ATGENOME1:18325_AT proton-dependent oligopeptide transport (POT) family protein at
CANINE:1595210_AT similar to solute carrier family 15 (H+/peptide transporter), member 2 cfa
CANINE:1587689_AT similar to solute carrier family 15 (H+/peptide transporter), member 2 cfa
CANINE_2:CFA.15044.1.A1_AT similar to solute carrier family 15 (H+/peptide transporter), member 2 cfa
CANINE_2:CFA.9574.1.S1_AT similar to solute carrier family 15 (H+/peptide transporter), member 2 cfa
CANINE_2:CFAAFFX.18192.1.S1_S_AT similar to solute carrier family 15 (H+/peptide transporter), member 2 cfa
HG-U95AV2:35862_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U133A:205317_S_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U133_PLUS_2:205317_S_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-FOCUS:205317_S_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U133A_2:205317_S_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
HU35KSUBD:RC_AA251546_S_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
HUGENEFL:S78203_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
U133_X3P:G10835270_3P_A_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
U133_X3P:HS.293242.0.A1_3P_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U133_PLUS_2:240159_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U133B:240159_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U95AV2:35863_G_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U95E:80543_AT solute carrier family 15 (H+/peptide transporter), member 2 hs
U133_X3P:HS.182575.0.S2_3P_AT Solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U133A_2:205316_AT Solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U133_PLUS_2:205316_AT Solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U133A:205316_AT Solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U95E:88226_AT Solute carrier family 15 (H+/peptide transporter), member 2 hs
HG-U95D:90253_AT Solute carrier family 15 (H+/peptide transporter), member 2 hs
MOE430A:1417600_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MOUSE430A_2:1417600_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MOUSE430_2:1417600_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MOUSE430_2:1424730_A_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MOE430A:1424730_A_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MOUSE430A_2:1424730_A_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MU11KSUBA:AA222947_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MG-U74AV2:103918_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MG-U74BV2:109639_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MOE430B:1447808_S_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MOUSE430_2:1447808_S_AT solute carrier family 15 (H+/peptide transporter), member 2 mm
MU11KSUBB:MSA.31998.0_S_AT Solute carrier family 15 (H+/peptide transporter), member 2, mRNA (cDNA clone IMAGE:3583898) mm
RG-U34A:RC_AI232096_AT solute carrier family 15 (H+/peptide transporter), member 2 rn
RAE230A:1398255_AT solute carrier family 15 (H+/peptide transporter), member 2 rn
RAT230_2:1398255_AT solute carrier family 15 (H+/peptide transporter), member 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6857 oligopeptide transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
15198 oligopeptide transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF66614 H+/oligopeptide symporter OPT-3 [Caenorhabditis elegans] 0.0
blast AAB54202 Oligopeptide transporter protein 3 [Caenorhabditis elegans] ref|NP_491767.3| OligoPeptide Transporter family member (opt-3) [Caenorhabditis elegans] sp|O01840|OPT3_CAEEL Putative oligopeptide transporter opt-3 0.0
blast CAE72955 Hypothetical protein CBG20288 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000109 EMBL-EBI TGF-beta receptor, type I/II extracellular region 1.0E-126
Pfam IPR000109 EMBL-EBI TGF-beta receptor, type I/II extracellular region 8.9E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491767.3 11 54-73,85-107,117-139,152-174,189-211,269-287,315-337,350-369,575-597,610-632,642-661
F56F4.5 11 54-73,85-107,117-139,152-174,189-211,269-287,315-337,350-369,575-597,610-632,642-661
Sequence
Target Sequence 
>C. ELEGANS:175798_AT
aaattcccattcaattcaatatttttgtgctttaatttgttcttatgtttaccaaactcc
ccttccaaaatgagatctagtcatccgcgtgactttaaattattttttttttcggttttc
ggcattttagaatcccatgtagacattgtcatccaatcatccacattccttgaacggtat
tttcttttttttgacaaaattgttttcctttgctcgctttttttcttgagcataattcta
cgtttctgcataatttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCCCATTCAATTCAATATTTT 18 117 2168 Antisense
TTGTGCTTTAATTTGTTCTTATGTT 269 707 2192 Antisense
TACCAAACTCCCCTTCCAAAATGAG 679 569 2217 Antisense
GAGATCTAGTCATCCGCGTGACTTT 357 397 2239 Antisense
GGTTTTCGGCATTTTAGAATCCCAT 692 505 2281 Antisense
TAGACATTGTCATCCAATCATCCAC 679 651 2307 Antisense
CCAATCATCCACATTCCTTGAACGG 33 277 2320 Antisense
CACATTCCTTGAACGGTATTTTCTT 175 197 2329 Antisense
CCTTTGCTCGCTTTTTTTCTTGAGC 689 267 2374 Antisense
TCTTGAGCATAATTCTACGTTTCTG 194 619 2391 Antisense
ATTCTACGTTTCTGCATAATTTGAT 303 9 2402 Antisense
Sequence Source GenBank