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[175796_s_at]

Description g7716071 /REP_DB=GenBank Identifier /GB=AF217278.1 /PROTEIN_GB=AAF68269.1 /CHR=1 /FEA=Mapped Transcript /DEF=ornithine decarboxylase antizyme
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 27      6grp_total > 99      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20045
1 2 3 4 range
A 10642.2
(-2.4)
P
8692.1
(-3)
P
9403.7
(-2.8)
P
28737.1
(3)
P
20045
B 9914
(-2.7)
P
9032.6
(-3)
P
10091
(-2.6)
P
25967.8
(3)
P
16935
C 10199.2
(-2.7)
P
9476.4
(-2.9)
P
9191.1
(-3)
P
28424.1
(3)
P
19233
avr 10251.8
(-2.6)
9067
(-3)
9561.9
(-2.8)
27709.7
(3)
18643

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1915
1 2 3 4 5 6 range
A 8611.2
(-0.4)
P
8374.7
(-1.2)
P
8056.2
(-2.3)
P
7865.3
(-3)
P
8168.8
(-1.9)
P
9572.8
(3)
P
1708
B 8102.5
(-0.6)
P
7978.4
(-1.2)
P
8754.4
(3)
P
7739.7
(-2.6)
P
8736.7
(2.9)
P
7658.3
(-3)
P
1096
C 8959.2
(2.1)
P
7669.6
(-3)
P
8181.2
(-1)
P
7815.2
(-2.4)
P
9172.2
(3)
P
9075.8
(2.6)
P
1503
avr 8557.6
(1.7)
8007.6
(-1.7)
8330.6
(0.3)
7806.7
(-3)
8692.6
(2.5)
8769
(3)
962
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3647
1 2 3 4 range
A 3874.8
(2.1)
P
1886.8
(-3)
P
2458.3
(-1.5)
P
4206.6
(3)
P
2320
B 3161.5
(-1.3)
P
2230.8
(-3)
P
2338.3
(-2.8)
P
5533.7
(3)
P
3303
C 3376.2
(-1.1)
P
2724.5
(-3)
P
3203.4
(-1.6)
P
4792.7
(3)
P
2068
avr 3470.8
(-0.2)
2280.7
(-3)
2666.7
(-2.1)
4844.3
(3)
2564

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1978
1 2 3 4 5 6 range
A 1587.4
(-3)
P
2978.5
(3)
P
1754.5
(-2.3)
P
1994.8
(-1.2)
P
2465
(0.8)
P
2330.7
(0.2)
P
1391
B 2819.3
(0.1)
P
2655.7
(-0.6)
P
2125.8
(-2.7)
P
2050
(-3)
P
3549.6
(3)
P
2855.7
(0.2)
P
1500
C 3320.8
(3)
P
2340.2
(-0.4)
P
2082.3
(-1.2)
P
1571.6
(-3)
P
2968
(1.8)
P
3038.2
(2)
P
1749
avr 2575.8
(0.8)
2658.1
(1.2)
1987.5
(-2.4)
1872.1
(-3)
2994.2
(3)
2741.5
(1.6)
1122
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175796_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19649
Sequence Type Exemplar sequence
Representative Public ID 7716071 NCBI
Target Description g7716071 /REP_DB=GenBank Identifier /GB=AF217278.1 /PROTEIN_GB=AAF68269.1 /CHR=1 /FEA=Mapped Transcript /DEF=ornithine decarboxylase antizyme
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059356(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_059356 NCBI Caenorhabditis elegans ZK484.1 (ZK484.1) mRNA, complete cds. 11/11 A 
SNAP00000003127 ENSEMBL cdna:SNAP chromosome:CEL140:I:6101770:6102126:1 11/11 None
GENEFINDER00000003137 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6101770:6102126:1 11/11 None
ZK484.1.3 ENSEMBL cdna:known chromosome:CEL140:I:6101437:6102555:1 gene:ZK484.1 11/11 None
ZK484.1.5 ENSEMBL cdna:known chromosome:CEL140:I:6101442:6102555:1 gene:ZK484.1 11/11 None
ZK484.1.2 ENSEMBL cdna:known chromosome:CEL140:I:6101443:6102555:1 gene:ZK484.1 11/11 A 
ZK484.1.1 ENSEMBL cdna:known chromosome:CEL140:I:6101446:6102555:1 gene:ZK484.1 11/11 A 
ZK484.1.4 ENSEMBL cdna:known chromosome:CEL140:I:6101600:6102555:1 gene:ZK484.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6101456-6102486(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK484.1
Entrez Gene 172291 Entrez gene
SwissProt Q9NHZ6 EMBL-EBI
WormBase CE15337 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4857 enzyme inhibitor activity inferred from electronic annotation QuickGO AmiGO
8073 ornithine decarboxylase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39388 Hypothetical protein ZK484.1 [Caenorhabditis elegans] ref|NP_491757.1| ZK484.1 [Caenorhabditis elegans] pir||T32868 hypothetical protein ZK484.1 - Caenorhabditis elegans 2.0E-40
blast AAF68269 ornithine decarboxylase antizyme [Caenorhabditis elegans] sp|Q9NHZ6|OAZ_CAEEL Ornithine decarboxylase antizyme (ODC-Az) 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR002993 EMBL-EBI Ornithine decarboxylase antizyme 9.6E-5
Sequence
Target Sequence
>C. ELEGANS:175796_S_AT
ggtgctcggcatctctaagaagaactttgtggacctcttggagttcgctgaagacaaact
cgaaatggagcgtgttttggctgtatttgagaaggctcgtattaacccaacggaaggatt
cccacgtactcttcgttacgtcggattccgtccatatgccatcgacgagcatccagttca
tctcccagctgaaaaatacttcatcatgagctacaaggtcta


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GGTGCTCGGCATCTCTAAGAAGAAC 42 501 295 Antisense
GAAGAACTTTGTGGACCTCTTGGAG 227 341 313 Antisense
GGACCTCTTGGAGTTCGCTGAAGAC 419 523 325 Antisense
GGAGCGTGTTTTGGCTGTATTTGAG 42 523 361 Antisense
GAGAAGGCTCGTATTAACCCAACGG 544 389 383 Antisense
CAACGGAAGGATTCCCACGTACTCT 632 143 402 Antisense
TACTCTTCGTTACGTCGGATTCCGT 248 645 421 Antisense
GATTCCGTCCATATGCCATCGACGA 418 433 438 Antisense
TATGCCATCGACGAGCATCCAGTTC 394 655 449 Antisense
TCCAGTTCATCTCCCAGCTGAAAAA 277 591 466 Antisense
ACTTCATCATGAGCTACAAGGTCTA 429 103 492 Antisense
Sequence Source GenBank