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[175795_at]

Description g7716071 /REP_DB=GenBank Identifier /GB=AF217278.1 /PROTEIN_GB=AAF68269.1 /CHR=1 /FEA=Mapped Transcript /DEF=ornithine decarboxylase antizyme
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 38      6grp_total > 29      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11902
1 2 3 4 range
A 8303.9
(-2.2)
P 		7163.8
(-3)
P 		8489.7
(-2)
P 		15339.7
(3)
P 		8176
B 7833.8
(-2.8)
P 		7557.4
(-3)
P 		8328.9
(-2.4)
P 		15600.3
(3)
P 		8043
C 7548.9
(-3)
P 		8166.8
(-2.7)
P 		7594.7
(-3)
P 		19066
(3)
P 		11517
avr 7895.5
(-2.8) 		7629.3
(-3) 		8137.8
(-2.7) 		16668.7
(3) 		9039

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2359
1 2 3 4 5 6 range
A 6405.1
(1.9)
P 		6625.6
(3)
P 		6069.4
(0.2)
P 		5413
(-3)
P 		6263.5
(1.2)
P 		6309.9
(1.4)
P 		1213
B 6972.5
(1)
P 		6698.4
(-0.2)
P 		6843.7
(0.4)
P 		6038.8
(-3)
P 		7446.1
(3)
P 		6125.6
(-2.6)
P 		1407
C 7771.7
(3)
P 		6635
(0.1)
P 		5457.2
(-3)
P 		5974.2
(-1.7)
P 		7526.6
(2.4)
P 		5538.6
(-2.8)
P 		2315
avr 7049.8
(2.9) 		6653
(1) 		6123.4
(-1.5) 		5808.7
(-3) 		7078.7
(3) 		5991.4
(-2.1) 		1270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1769
1 2 3 4 range
A 3023.5
(3)
P 		1555.1
(-3)
P 		2219.4
(-0.3)
P 		2245.4
(-0.2)
P 		1468
B 2498.1
(-0.4)
P 		1866.5
(-3)
P 		1930
(-2.7)
P 		3324.4
(3)
P 		1458
C 2498.9
(-2)
P 		2348
(-3)
P 		2647
(-0.9)
P 		3214.8
(3)
P 		867
avr 2673.5
(1.5) 		1923.2
(-3) 		2265.5
(-1) 		2928.2
(3) 		1005

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1845
1 2 3 4 5 6 range
A 1180.7
(-3)
P 		2356.4
(3)
P 		1321.8
(-2.3)
P 		1372.9
(-2)
P 		1890
(0.6)
P 		1536.3
(-1.2)
P 		1176
B 2426.1
(0.5)
P 		2229.6
(-0.3)
P 		1661.8
(-2.7)
P 		1599.5
(-3)
P 		3025.3
(3)
P 		2284.2
(-0.1)
P 		1426
C 2880.6
(3)
P 		2024.5
(-0.1)
P 		1388.9
(-2.3)
P 		1201.4
(-3)
P 		2435.5
(1.4)
P 		1854.1
(-0.7)
P 		1679
avr 2162.5
(1.4) 		2203.5
(1.6) 		1457.5
(-2.6) 		1391.3
(-3) 		2450.3
(3) 		1891.5
(-0.2) 		1059
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19649
Sequence Type Exemplar sequence
Representative Public ID 7716071 NCBI
Target Description g7716071 /REP_DB=GenBank Identifier /GB=AF217278.1 /PROTEIN_GB=AAF68269.1 /CHR=1 /FEA=Mapped Transcript /DEF=ornithine decarboxylase antizyme
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059356 NCBI Caenorhabditis elegans ZK484.1 (ZK484.1) mRNA, complete cds. 11/11 A 
ZK484.1.3 ENSEMBL cdna:known chromosome:CEL140:I:6101437:6102555:1 gene:ZK484.1 11/11 None
ZK484.1.5 ENSEMBL cdna:known chromosome:CEL140:I:6101442:6102555:1 gene:ZK484.1 11/11 None
ZK484.1.2 ENSEMBL cdna:known chromosome:CEL140:I:6101443:6102555:1 gene:ZK484.1 11/11 A 
ZK484.1.1 ENSEMBL cdna:known chromosome:CEL140:I:6101446:6102555:1 gene:ZK484.1 11/11 A 
ZK484.1.4 ENSEMBL cdna:known chromosome:CEL140:I:6101600:6102555:1 gene:ZK484.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6101456-6102486(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK484.1
Entrez Gene 172291 Entrez gene
SwissProt Q9NHZ6 EMBL-EBI
WormBase CE15337 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4857 enzyme inhibitor activity inferred from electronic annotation QuickGO AmiGO
8073 ornithine decarboxylase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39388 Hypothetical protein ZK484.1 [Caenorhabditis elegans] ref|NP_491757.1| ZK484.1 [Caenorhabditis elegans] pir||T32868 hypothetical protein ZK484.1 - Caenorhabditis elegans 2.0E-40
blast AAF68269 ornithine decarboxylase antizyme [Caenorhabditis elegans] sp|Q9NHZ6|OAZ_CAEEL Ornithine decarboxylase antizyme (ODC-Az) 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR002993 EMBL-EBI Ornithine decarboxylase antizyme 9.6E-5
Sequence
Target Sequence 
>C. ELEGANS:175795_AT
attggcgatcatgattccacacgatcaaccggtgctcggcatctctaagaagaactttgt
ggacctcttggagttcgctgaagacaaactcgaaatggagcgtgttttggctgtatttga
gaaggctcgtattaacccaacggaaggattcccacgtactcttcgttacgtcggattccg
tccatatgccatcgacgagcatccagttcatctcccagctgaaaaatacttcatcatgag
ctacaaggtctaatggattcatctcaccaatttcttttcgttttatcgatttctcgccgc
ttttaaaaatgttatttttctttctctcacctttttctataccaacccctcgaaaaaatg
cactttaaaaactttcaaaaaatttcctccttcaagaattctctagtataattctctaaa
tctctgtgttcatgtagtgtacaaattctttaattttccagaaaaaatcctttttggcta
tttctctgattatttttgcccaccacacccactcccatccacaaccagctcattcctgtt
tctaagagatattagtgaccgatgcttcctgagaaattctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGCGATCATGATTCCACACGAT 327 3 265 Antisense
AAGGTCTAATGGATTCATCTCACCA 161 161 509 Antisense
CATCTCACCAATTTCTTTTCGTTTT 320 213 524 Antisense
TTTCGTTTTATCGATTTCTCGCCGC 412 671 540 Antisense
GATTTCTCGCCGCTTTTAAAAATGT 65 427 552 Antisense
TACCAACCCCTCGAAAAAATGCACT 331 649 604 Antisense
ATTTCCTCCTTCAAGAATTCTCTAG 560 17 646 Antisense
AATTCTCTAAATCTCTGTGTTCATG 482 177 674 Antisense
AATCCTTTTTGGCTATTTCTCTGAT 646 165 730 Antisense
CAACCAGCTCATTCCTGTTTCTAAG 393 187 786 Antisense
GACCGATGCTTCCTGAGAAATTCTC 266 383 821 Antisense
Sequence Source GenBank