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[175794_s_at]

Description g5880870 /REP_DB=GenBank Identifier /GB=AF156960.1 /PROTEIN_GB=AAD54945.1 /CHR=1 /FEA=Mapped Transcript /DEF=NTF2-related export protein NXT1
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 87      6grp_total > 67      4grp_total > 49      6grp_highest_sub > In      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 414
1 2 3 4 range
A 957.6
(-0.4)
P 		1033.2
(0.8)
P 		1175.2
(3)
P 		794.3
(-3)
P 		381
B 891.5
(-3)
P 		1117.9
(2.5)
P 		1136.4
(3)
P 		1081.6
(1.7)
P 		245
C 910.7
(-3)
P 		1208.4
(3)
P 		1096.2
(0.7)
P 		934.8
(-2.5)
P 		298
avr 919.9
(-3) 		1119.8
(2.6) 		1135.9
(3) 		936.9
(-2.5) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 498
1 2 3 4 5 6 range
A 972.6
(-2.5)
P 		1033.1
(-1.8)
P 		1429
(3)
P 		1140.3
(-0.5)
P 		931.3
(-3)
P 		1126.3
(-0.6)
P 		498
B 1119.1
(-1.1)
P 		1186.1
(-0.1)
P 		992.3
(-3)
P 		1093.7
(-1.5)
P 		1312.5
(1.7)
P 		1399.9
(3)
P 		408
C 1187.8
(-0.5)
P 		1155.2
(-1)
P 		1017.9
(-3)
P 		1111.3
(-1.6)
P 		1126.6
(-1.4)
P 		1422.3
(3)
P 		404
avr 1093.2
(-3) 		1124.8
(-2.1) 		1146.4
(-1.6) 		1115.1
(-2.4) 		1123.5
(-2.2) 		1316.2
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 348.7
(3)
P 		224.3
(-0.2)
P 		307.2
(1.9)
P 		116.3
(-3)
P 		232
B 284.3
(3)
P 		276.1
(2.1)
P 		263.3
(0.7)
P 		230.5
(-3)
P 		54
C 301.5
(0.8)
P 		347.4
(2.1)
P 		382.1
(3)
P 		157.6
(-3)
P 		225
avr 311.5
(2.8) 		282.6
(1.6) 		317.5
(3) 		168.1
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 179.3
(-3)
P 		367.4
(3)
P 		311.2
(1.2)
P 		289.2
(0.5)
P 		281
(0.2)
P 		274.2
(0)
P 		188
B 389.4
(0)
P 		394.8
(0.2)
P 		241
(-3)
P 		289.7
(-2)
P 		533.2
(3)
P 		522
(2.8)
P 		292
C 440.3
(2.1)
P 		352.5
(0.1)
P 		259.1
(-2.2)
P 		223.5
(-3)
P 		364.6
(0.4)
P 		476.1
(3)
P 		253
avr 336.3
(-0.4) 		371.6
(1) 		270.4
(-2.9) 		267.5
(-3) 		392.9
(1.8) 		424.1
(3) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175794_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19630
Sequence Type Exemplar sequence
Representative Public ID 5880870 NCBI
Target Description g5880870 /REP_DB=GenBank Identifier /GB=AF156960.1 /PROTEIN_GB=AAD54945.1 /CHR=1 /FEA=Mapped Transcript /DEF=NTF2-related export protein NXT1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058675(11), NM_058676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058675 NCBI Caenorhabditis elegans Y71F9AM.6 (Y71F9AM.6) mRNA, complete cds. 11/11 None
NM_058676 NCBI Caenorhabditis elegans NTF2-related ExporT protein family member (nxt-1) (nxt-1) mRNA, complete cds. 11/11 None
SNAP00000002738 ENSEMBL cdna:SNAP chromosome:CEL140:I:2929841:2931256:1 11/11 None
Y71F9AM.6.2 ENSEMBL cdna:known chromosome:CEL140:I:2928396:2931254:1 gene:Y71F9AM.6 11/11 A 
Y71F9AM.5.2 ENSEMBL cdna:known chromosome:CEL140:I:2929785:2931344:1 gene:Y71F9AM.5 11/11 None
Y71F9AM.5.1 ENSEMBL cdna:known chromosome:CEL140:I:2929834:2931362:1 gene:Y71F9AM.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2929840-2931331(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol nxt-1
Ensembl Y71F9AM.6
Y71F9AM.5
Entrez Gene 171865 Entrez gene
171866 Entrez gene
SwissProt Q9U757 EMBL-EBI
Q95XT5 EMBL-EBI
WormBase CE26780 Wormbase
CE26244 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13096_G_AT translocon-associated protein alpha (TRAP alpha) family protein at
ATGENOME1:13095_AT translocon-associated protein alpha (TRAP alpha) family protein at
ATH1-121501:264020_AT translocon-associated protein alpha (TRAP alpha) family protein at
CANINE:1604378_AT signal sequence receptor, alpha (translocon-associated protein alpha) cfa
CANINE:1597616_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) cfa
CANINE:1597615_AT signal sequence receptor, alpha (translocon-associated protein alpha) cfa
CANINE_2:CFA.1295.1.S1_AT signal sequence receptor, alpha (translocon-associated protein alpha) cfa
CANINE_2:CFAAFFX.14997.1.S1_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) cfa
DROSOPHILA_2:1626456_AT dm
DROSGENOME1:154368_AT dm
CHICKEN:GGAAFFX.11624.1.S1_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) gga
HG-FOCUS:201894_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133A:201894_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133_PLUS_2:201894_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133A_2:201894_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133_PLUS_2:200889_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133A:200889_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133A_2:200889_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133A:200891_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133_PLUS_2:200891_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133A_2:200891_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-FOCUS:200891_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133_PLUS_2:200890_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133A_2:200890_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U133A:200890_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HUGENEFL:Z12830_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HUGENEFL:M14219_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
U133_X3P:G6552340_3P_A_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
U133_X3P:G4503270_3P_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
U133_X3P:HS.250773.0.S2_3P_A_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
U133_X3P:HS.250773.0.S1_3P_S_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
U133_X3P:HS.250773.0.S1_3P_A_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U95AV2:34648_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U95AV2:34649_AT signal sequence receptor, alpha (translocon-associated protein alpha) hs
HG-U95D:69796_AT Signal sequence receptor, alpha (translocon-associated protein alpha) hs
HU35KSUBC:RC_N66724_AT Signal sequence receptor, alpha (translocon-associated protein alpha) hs
MOUSE430_2:1417763_AT signal sequence receptor, alpha mm
MOE430A:1417763_AT signal sequence receptor, alpha mm
MOUSE430A_2:1417763_AT signal sequence receptor, alpha mm
MOE430A:1448843_AT signal sequence receptor, alpha mm
MOUSE430A_2:1448843_AT signal sequence receptor, alpha mm
MOUSE430_2:1448843_AT signal sequence receptor, alpha mm
MU11KSUBB:MSA.22628.0_S_AT signal sequence receptor, alpha mm
MG-U74AV2:97722_AT signal sequence receptor, alpha mm
MG-U74AV2:94511_AT signal sequence receptor, alpha mm
MG-U74CV2:135739_AT signal sequence receptor, alpha mm
MG-U74CV2:137565_AT signal sequence receptor, alpha mm
MG-U74CV2:170007_I_AT signal sequence receptor, alpha mm
MOE430A:1417764_AT signal sequence receptor, alpha mm
MOUSE430A_2:1417764_AT signal sequence receptor, alpha mm
MOUSE430_2:1417764_AT signal sequence receptor, alpha mm
MOE430B:1441327_A_AT signal sequence receptor, alpha mm
MOUSE430_2:1441327_A_AT signal sequence receptor, alpha mm
MG-U74BV2:104983_AT signal sequence receptor, alpha mm
MOE430B:1444526_AT Signal sequence receptor, alpha, mRNA (cDNA clone MGC:19285 IMAGE:4017600) mm
MOUSE430_2:1444526_AT Signal sequence receptor, alpha, mRNA (cDNA clone MGC:19285 IMAGE:4017600) mm
MU19KSUBB:TC26236_AT Signal sequence receptor, alpha, mRNA (cDNA clone MGC:19285 IMAGE:4017600) mm
MU19KSUBB:TC31643_AT Signal sequence receptor, alpha, mRNA (cDNA clone MGC:19285 IMAGE:4017600) mm
MU19KSUBB:TC32242_AT Signal sequence receptor, alpha, mRNA (cDNA clone MGC:19285 IMAGE:4017600) mm
MU19KSUBC:TC35925_AT Signal sequence receptor, alpha, mRNA (cDNA clone MGC:19285 IMAGE:4017600) mm
MU19KSUBC:TC35925_G_AT Signal sequence receptor, alpha, mRNA (cDNA clone MGC:19285 IMAGE:4017600) mm
MU19KSUBC:TC35926_AT Signal sequence receptor, alpha, mRNA (cDNA clone MGC:19285 IMAGE:4017600) mm
RG-U34B:RC_AA851871_AT signal sequence receptor, alpha (predicted) rn
RG-U34C:RC_AI230697_AT signal sequence receptor, alpha (predicted) rn
RAE230A:1373090_AT signal sequence receptor, alpha (predicted) rn
RAT230_2:1373090_AT signal sequence receptor, alpha (predicted) rn
RAE230B:1390767_AT signal sequence receptor, alpha (predicted) rn
RAT230_2:1390767_AT signal sequence receptor, alpha (predicted) rn
RAE230B:1381987_AT Signal sequence receptor, alpha (predicted) rn
RAT230_2:1381987_AT Signal sequence receptor, alpha (predicted) rn
RAE230A:1384833_AT Signal sequence receptor, alpha (predicted) rn
RAT230_2:1384833_AT Signal sequence receptor, alpha (predicted) rn
RAE230B:1396685_AT Signal sequence receptor, alpha (predicted) rn
RAT230_2:1396685_AT Signal sequence receptor, alpha (predicted) rn
RG-U34B:RC_AA801117_AT Signal sequence receptor, alpha (predicted) rn
RG-U34C:RC_AI137491_AT Signal sequence receptor, alpha (predicted) rn
RG-U34C:RC_AI175803_AT Signal sequence receptor, alpha (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6606 protein import into nucleus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK66027 Hypothetical protein Y71F9AM.6 [Caenorhabditis elegans] ref|NP_491076.1| Y71F9AM.6 [Caenorhabditis elegans] 1.0E-137
blast CAE60584 Hypothetical protein CBG04219 [Caenorhabditis briggsae] 1.0E-123
blast AAK66028 Ntf2-related export protein protein 1 [Caenorhabditis elegans] ref|NP_491077.1| NTF2-related ExporT protein family member (nxt-1) [Caenorhabditis elegans] gb|AAD54945.1| NTF2-related export protein NXT1 [Caenorhabditis elegans] sp|Q9U757|NXT1_CAEEL NTF2-related export protein 8.0E-75
blast CAE60583 Hypothetical protein CBG04218 [Caenorhabditis briggsae] 4.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR005595 EMBL-EBI Translocon-associated protein (TRAP), alpha subunit 1.9E-43
Pfam IPR002075 EMBL-EBI Nuclear transport factor 2 (NTF2) 8.8E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491076.1 1 175-197
Y71F9AM.6.2 1 175-197
Sequence
Target Sequence 
>C. ELEGANS:175794_S_AT
atcggatttctctacacacaagtgtcaaatgccgtctggaacgggaatcccatcaacggg
tacgacagtatttgcgaattcatgaaagctcttccaagtacacaacacgatattcaatct
cttgatgcacaacgtcttccggaaggtgttactggtgatatgtcgggcggtatgcttctc
aatgtggccggagctgtaactgtggacggcgattcgaagcgagctttcactcaaacgctt
cttctcggcgttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGATTTCTCTACACACAAGTGT 370 35 124 Antisense
ACACAAGTGTCAAATGCCGTCTGGA 329 111 139 Antisense
GGGAATCCCATCAACGGGTACGACA 597 493 166 Antisense
AGCTCTTCCAAGTACACAACACGAT 370 79 210 Antisense
AATCTCTTGATGCACAACGTCTTCC 594 169 239 Antisense
GGTGTTACTGGTGATATGTCGGGCG 646 499 268 Antisense
TATGTCGGGCGGTATGCTTCTCAAT 76 653 282 Antisense
GTGGCCGGAGCTGTAACTGTGGACG 5 493 307 Antisense
GTGGACGGCGATTCGAAGCGAGCTT 118 491 325 Antisense
CGAGCTTTCACTCAAACGCTTCTTC 632 249 343 Antisense
TCAAACGCTTCTTCTCGGCGTTGAA 232 629 354 Antisense
Sequence Source GenBank