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[175793_s_at]

Description g3172340 /REP_DB=GenBank Identifier /GB=AF049142.1 /PROTEIN_GB=AAC24116.1 /CHR=3 /FEA=Mapped Transcript /DEF=ATP-binding cassette transporter
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 94      6grp_total > 79      4grp_total > 07      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 568.9
(3)
P 		232.9
(-3)
P 		350.7
(-0.9)
P 		326.2
(-1.3)
P 		336
B 382.7
(-0.6)
P 		282.8
(-2.9)
P 		276.7
(-3)
P 		545.9
(3)
P 		269
C 673.5
(3)
P 		306.8
(-3)
P 		582.1
(1.5)
P 		556.8
(1.1)
P 		367
avr 541.7
(3) 		274.2
(-3) 		403.2
(-0.1) 		476.3
(1.5) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 929
1 2 3 4 5 6 range
A 385.3
(-2.2)
P 		477.2
(-1.2)
P 		318.8
(-3)
P 		343.9
(-2.7)
P 		826.7
(2.9)
P 		833.6
(3)
P 		515
B 574.6
(-1.3)
P 		610.1
(-1)
P 		404.5
(-3)
P 		478.3
(-2.3)
P 		719.6
(0.1)
P 		1006.9
(3)
P 		602
C 658.7
(-1)
P 		527.3
(-1.8)
P 		353.4
(-3)
P 		402
(-2.7)
P 		702
(-0.7)
P 		1247.3
(3)
P 		894
avr 539.5
(-1.4) 		538.2
(-1.4) 		358.9
(-3) 		408.1
(-2.6) 		749.4
(0.5) 		1029.3
(3) 		670
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 207.1
(3)
P 		50.5
(-2.9)
P 		91.7
(-1.3)
P 		47.7
(-3)
P 		159
B 122
(3)
P 		69.8
(-2.4)
P 		64.1
(-3)
P 		116.3
(2.4)
P 		58
C 222.9
(3)
P 		88.2
(-3)
P 		202.9
(2.1)
P 		93.9
(-2.7)
P 		135
avr 184
(3) 		69.5
(-3) 		119.6
(-0.4) 		86
(-2.1) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 71
(-2.9)
P 		169.7
(0.3)
P 		69.4
(-3)
P 		87.2
(-2.4)
P 		249.5
(3)
P 		202.9
(1.4)
P 		180
B 199.9
(-0.8)
P 		203.1
(-0.7)
P 		98.2
(-3)
P 		126.7
(-2.4)
P 		292.4
(1.2)
P 		375.5
(3)
P 		277
C 244.1
(-0.1)
P 		160.9
(-1.6)
P 		89.9
(-2.8)
P 		80.8
(-3)
P 		227.2
(-0.4)
P 		417.5
(3)
P 		337
avr 171.7
(-0.9) 		177.9
(-0.8) 		85.8
(-3) 		98.2
(-2.7) 		256.4
(1.2) 		332
(3) 		246
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175793_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19809
Sequence Type Exemplar sequence
Representative Public ID 3172340 NCBI
Target Description g3172340 /REP_DB=GenBank Identifier /GB=AF049142.1 /PROTEIN_GB=AAC24116.1 /CHR=3 /FEA=Mapped Transcript /DEF=ATP-binding cassette transporter
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026054(11), NM_001026055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026054 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-7) (ced-7) mRNA, complete cds. 11/11 None
NM_001026055 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-7) (ced-7) mRNA, complete cds. 11/11 None
C48B4.4b ENSEMBL cdna:known chromosome:CEL140:III:9570289:9579015:-1 gene:C48B4.4 11/11 None
C48B4.4c ENSEMBL cdna:known chromosome:CEL140:III:9570294:9579976:-1 gene:C48B4.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176352 3 2 NM_001026054 175793_s_at (11)
NM_001026055 175793_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9570288-9579974(-) 100.0 100.0
Public Domain and Genome References
Ensembl C48B4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82384 Hypothetical protein C48B4.4b [Caenorhabditis elegans] ref|NP_001021225.1| CEll Death abnormality family member (ced-7) [Caenorhabditis elegans] 0.0
blast F88559 protein C48B4.4b [imported] - Caenorhabditis elegans 0.0
blast CAA82383 Hypothetical protein C48B4.4a [Caenorhabditis elegans] ref|NP_499115.2| CEll Death abnormality family member (ced-7) [Caenorhabditis elegans] 0.0
blast CAC42271 Hypothetical protein C48B4.4c [Caenorhabditis elegans] ref|NP_001021226.1| CEll Death abnormality family member (ced-7) [Caenorhabditis elegans] sp|P34358|CED7_CAEEL ABC transporter ced-7 (Cell death protein 7) gb|AAC24116.1| ATP-binding cassette transporter [Caenorhabditis elegans] 0.0
blast S60124 transport protein homolog C48B4.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 1.2E-52
Pfam IPR003439 EMBL-EBI ABC transporter 3.3E-41
Pfam IPR003439 EMBL-EBI ABC transporter 1.2E-52
Pfam IPR003439 EMBL-EBI ABC transporter 3.3E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021225.1 12 254-276,304-326,336-358,389-411,434-456,947-969,1111-1133,1154-1176,1186-1208,1221-1243,1253-1275,1296-1315
NP_001021226.1 12 254-276,304-326,336-358,389-411,434-456,960-982,1124-1146,1167-1189,1199-1221,1234-1256,1266-1288,1309-1328
C48B4.4b 12 254-276,304-326,336-358,389-411,434-456,947-969,1111-1133,1154-1176,1186-1208,1221-1243,1253-1275,1296-1315
C48B4.4c 12 254-276,304-326,336-358,389-411,434-456,960-982,1124-1146,1167-1189,1199-1221,1234-1256,1266-1288,1309-1328
Sequence
Target Sequence 
>C. ELEGANS:175793_S_AT
aacatgcataatacctcggctctcacacacaaaattgaaacaatttgactgtatattctc
gaatttttgtagtttttgaaacttctctttcccaaacccgatgattatttattttcttat
ttttcaaatctgctttggtatcattttgaactttcccaaaaatcctttaataacttggtg
caataatcgagtaatattccaaatttgtgttgccgaataaacgggtgagtggtaacttat
tcattcatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATGCATAATACCTCGGCTCTCA 582 137 5272 Antisense
CCTCGGCTCTCACACACAAAATTGA 324 267 5285 Antisense
ACAATTTGACTGTATATTCTCGAAT 352 115 5311 Antisense
CTCTTTCCCAAACCCGATGATTATT 616 229 5356 Antisense
CAAACCCGATGATTATTTATTTTCT 179 191 5364 Antisense
TTTCTTATTTTTCAAATCTGCTTTG 91 673 5384 Antisense
ATCTGCTTTGGTATCATTTTGAACT 679 33 5399 Antisense
TGGTATCATTTTGAACTTTCCCAAA 362 549 5407 Antisense
AAATCCTTTAATAACTTGGTGCAAT 330 117 5431 Antisense
AATATTCCAAATTTGTGTTGCCGAA 249 173 5464 Antisense
GAGTGGTAACTTATTCATTCATCAT 649 401 5498 Antisense
Sequence Source GenBank