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[175792_at] protein phosphatase

Description g5805391 /REP_DB=GenBank Identifier /GB=AF174643.1 /PROTEIN_GB=AAD51977.1 /CHR=1 /FEA=Mapped Transcript /DEF=PP2A-B regulatory subunit PR55-B
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 45      4grp_high_8_8 > 08      6grp_highest_nonorm > 67      6grp_total > 57      4grp_total > 23      6grp_highest_sub > Cu      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 997
1 2 3 4 range
A 2250.7
(3)
P 		1253.5
(-3)
P 		1582.4
(-1)
P 		1898.2
(0.9)
P 		997
B 1955.6
(1)
P 		1549.7
(-2.3)
P 		1458.1
(-3)
P 		2205.5
(3)
P 		747
C 2245.8
(3)
P 		1346.5
(-3)
P 		1543.9
(-1.7)
P 		1768.7
(-0.2)
P 		899
avr 2150.7
(3) 		1383.2
(-3) 		1528.1
(-1.9) 		1957.5
(1.5) 		768

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 1917.2
(2)
P 		1756.5
(0.1)
P 		1536.3
(-2.5)
P 		1728
(-0.2)
P 		1489.4
(-3)
P 		2006.8
(3)
P 		517
B 1795.7
(0.4)
P 		1565
(-1.5)
P 		1723.9
(-0.2)
P 		1669.1
(-0.7)
P 		1392.6
(-3)
P 		2098.8
(3)
P 		706
C 1788.8
(-0.1)
P 		1535.1
(-2.5)
P 		1713.5
(-0.8)
P 		1710.6
(-0.8)
P 		1485.8
(-3)
P 		2108.8
(3)
P 		623
avr 1833.9
(0.7) 		1618.9
(-1.4) 		1657.9
(-1) 		1702.6
(-0.6) 		1455.9
(-3) 		2071.5
(3) 		616
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 547
1 2 3 4 range
A 819.5
(3)
P 		272.1
(-3)
P 		413.7
(-1.4)
P 		277.9
(-2.9)
P 		547
B 623.6
(3)
P 		382.7
(-2.1)
P 		337.9
(-3)
P 		470
(-0.2)
P 		286
C 743.4
(3)
P 		387.1
(-1.8)
P 		538.1
(0.2)
P 		298.2
(-3)
P 		445
avr 728.8
(3) 		347.3
(-3) 		429.9
(-1.7) 		348.7
(-3) 		382

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 353.4
(-2.6)
P 		624.7
(3)
P 		334.6
(-3)
P 		438.3
(-0.9)
P 		449.4
(-0.6)
P 		488.6
(0.2)
P 		290
B 624.8
(0.4)
P 		520.9
(-1.3)
P 		418.6
(-3)
P 		442.1
(-2.6)
P 		565.8
(-0.6)
P 		782.6
(3)
P 		364
C 663
(2.3)
P 		468.4
(-0.9)
P 		436.1
(-1.5)
P 		344
(-3)
P 		480.8
(-0.7)
P 		705.9
(3)
P 		362
avr 547.1
(0.4) 		538
(0.2) 		396.4
(-3) 		408.1
(-2.7) 		498.7
(-0.7) 		659
(3) 		263
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175792_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19686
Sequence Type Exemplar sequence
Representative Public ID 5805391 NCBI
Target Description g5805391 /REP_DB=GenBank Identifier /GB=AF174643.1 /PROTEIN_GB=AAD51977.1 /CHR=1 /FEA=Mapped Transcript /DEF=PP2A-B regulatory subunit PR55-B
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060190 NCBI Caenorhabditis elegans SUppressor of activated let-60 Ras family member (sur-6) (sur-6) mRNA, complete cds. 11/11 A 
F26E4.1 ENSEMBL cdna:known chromosome:CEL140:I:9762243:9766019:1 gene:F26E4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9762175-9765950(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein phosphatase
Gene Symbol sur-6
Ensembl F26E4.1
Entrez Gene 172826 Entrez gene
SwissProt P90851 EMBL-EBI
WormBase CE09685 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259404_AT serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B at
CANINE:1599876_S_AT similar to alpha isoform of regulatory subunit B55, protein phosphatase 2 cfa
CANINE_2:CFA.1163.1.A1_S_AT similar to alpha isoform of regulatory subunit B55, protein phosphatase 2 cfa
CHICKEN:GGA.9510.1.S1_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform gga
CHICKEN:GGA.9510.2.S1_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform gga
CHICKEN:GGAAFFX.11793.1.S1_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform gga
HG-U95AV2:1383_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HC-G110:1383_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HUGENEFL:M64929_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133A:202313_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133_PLUS_2:202313_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-FOCUS:202313_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133A_2:202313_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
U133_X3P:G4506018_3P_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
U133_X3P:HS.196155.0.A1_3P_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
U133_X3P:HS.132822.0.A1_3P_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133_PLUS_2:236492_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133B:236492_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133_PLUS_2:237636_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133B:237636_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95AV2:41167_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95D:78278_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95D:82421_I_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95D:82422_R_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
U133_X3P:HS.61696.0.A1_3P_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133_PLUS_2:228013_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U133B:228013_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95B:46187_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95E:69226_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95E:70953_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95E:74905_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HG-U95D:80185_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
HU35KSUBC:RC_F13792_S_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform hs
MU11KSUBA:AA168363_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MU11KSUBB:MSA.17120.0_F_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MU11KSUBB:MSA.13362.0_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MU11KSUBB:MSA.37671.0_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MU11KSUBB:MSA.27521.0_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MG-U74AV2:98916_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MG-U74CV2:167293_R_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MG-U74CV2:170949_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOE430A:1453260_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430A_2:1453260_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430_2:1453260_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOE430A:1437730_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430A_2:1437730_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430_2:1437730_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOE430A:1429715_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430A_2:1429715_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MOUSE430_2:1429715_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform mm
MU19KSUBA:TC24434_AT PREDICTED: Mus musculus protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform (Ppp2r2a), mRNA mm
MU19KSUBB:TC27106_AT PREDICTED: Mus musculus protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform (Ppp2r2a), mRNA mm
RAE230A:1387485_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAT230_2:1387485_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34A:M83298_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34A:D14419_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34A:M83298_G_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34C:RC_AA819691_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAE230A:1369221_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAT230_2:1369221_AT protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAE230A:1376938_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAT230_2:1376938_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAE230B:1392741_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RAT230_2:1392741_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34C:RC_AI145364_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
RG-U34C:RC_AI228112_S_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform rn
YEAST_2:1771714_AT Non-essential regulatory subunit B of protein phosphatase 2A; has multiple roles in mitosis and protein biosynthesis; found in the nucleus of most cells but also at the bud neck (large-budded cells) and at the bud tip (small-budded cells) Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
159 protein phosphatase type 2A complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8601 protein phosphatase type 2A regulator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99882 Hypothetical protein F26E4.1 [Caenorhabditis elegans] emb|CAB03008.1| Hypothetical protein F26E4.1 [Caenorhabditis elegans] ref|NP_492591.1| SUppressor of activated let-60 Ras family member (sur-6) [Caenorhabditis elegans] gb|AAD51977.1| PP2A-B regulatory subunit PR55/B [Caenorhabditis elegans] 0.0
blast CAE60235 Hypothetical protein CBG03807 [Caenorhabditis briggsae] 0.0
blast S65951 [phosphorylase] phosphatase (EC 3.1.3.17) 55K chain - African clawed frog (fragment) 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0021
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.029
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.012
Sequence
Target Sequence 
>C. ELEGANS:175792_AT
aaagttgtcttttgcttccaatttgagatagagttgtactttattattcttatagcttct
ttttctttactctctccctctctctatcctctcatatcattcttgaattacgtggcccgt
tttctatacttttccctcactcttcaactccagtgttctctttcttgtctcttccaccac
cacttttaaaaagataactgtagatccttaaccccgaatcattcgggtcgtgtctctccc
acttttaggatgatttctcctgttagattcacaatgtgtttcacgacttaatcctcttgt
ttgaaagcgtgtgaaggtattattctcaccttgttagctccattctgtaattttgaaaac
tataaaaatcgcccaaaaaatttttgaaatttttccgactttagttattttctctccact
ttctctgttcgtttgtctgtcacaaaattacaaactttcaaatcaagaatcttgacataa
atttttgtattacttccctcatatttcttcatcattaaatccccgtgggtgtgtctcatc
attaagtcttccttttcccataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTGTCTTTTGCTTCCAATTTG 680 121 1928 Antisense
TGAATTACGTGGCCCGTTTTCTATA 306 571 2031 Antisense
AGATCCTTAACCCCGAATCATTCGG 605 63 2129 Antisense
GTGTCTCTCCCACTTTTAGGATGAT 440 487 2157 Antisense
GGATGATTTCTCCTGTTAGATTCAC 115 515 2175 Antisense
ATGTGTTTCACGACTTAATCCTCTT 642 49 2201 Antisense
GTATTATTCTCACCTTGTTAGCTCC 343 453 2244 Antisense
ACCTTGTTAGCTCCATTCTGTAATT 7 87 2255 Antisense
GACTTTAGTTATTTTCTCTCCACTT 560 371 2324 Antisense
TCTCTGTTCGTTTGTCTGTCACAAA 236 611 2349 Antisense
TCATTAAGTCTTCCTTTTCCCATAA 234 615 2466 Antisense
Sequence Source GenBank